View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7331_low_16 (Length: 235)

Name: NF7331_low_16
Description: NF7331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7331_low_16
NF7331_low_16
[»] chr6 (5 HSPs)
chr6 (140-223)||(16693112-16693195)
chr6 (140-223)||(5013972-5014059)
chr6 (68-109)||(16693040-16693081)
chr6 (68-109)||(5014100-5014141)
chr6 (19-51)||(16692988-16693020)
[»] chr8 (2 HSPs)
chr8 (140-223)||(28535306-28535389)
chr8 (145-200)||(11463814-11463870)
[»] chr1 (6 HSPs)
chr1 (140-223)||(22788277-22788360)
chr1 (140-223)||(18431525-18431612)
chr1 (68-109)||(22788391-22788432)
chr1 (68-108)||(18431649-18431689)
chr1 (19-51)||(18431702-18431734)
chr1 (19-51)||(22788449-22788481)
[»] chr3 (4 HSPs)
chr3 (141-223)||(52118439-52118521)
chr3 (140-223)||(26555619-26555702)
chr3 (19-50)||(26555502-26555533)
chr3 (81-109)||(52118379-52118407)
[»] chr2 (2 HSPs)
chr2 (140-223)||(16916258-16916345)
chr2 (68-109)||(16916381-16916422)
[»] chr7 (2 HSPs)
chr7 (140-223)||(46437452-46437539)
chr7 (68-109)||(46437375-46437416)
[»] chr5 (1 HSPs)
chr5 (19-51)||(424823-424855)


Alignment Details
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 16693112 - 16693195
Alignment:
Q  140 gtttcttctcctcttctctactctcacaatcggtttcttcttctctgctcacaaatcacaattcacaatctcctttcttctcac 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16693112 gtttcttctcctcttctctactctcacaatcggtttcttcttctcttctcacaaatcacaattcacaatctcctttcttctcac 16693195  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 5014059 - 5013972
Alignment:
Q  140 gtttcttctcctcttctctactctcacaa----tcggtttcttcttctctgctcacaaatcacaattcacaatctcctttcttctcac 223  Q
    |||||||||||||||||||||||||||||    ||| ||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  5014059 gtttcttctcctcttctctactctcacaaacaatcgatttcttcttctcttctcacaaatcacaattcacaatcgtctttcttctcac 5013972  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 16693040 - 16693081
Alignment:
Q  68 atatgcataaacataaggcaagggaaggaaagtggaaattgg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16693040 atatgcataaacataaggcaagggaaggaaagtggaaattgg 16693081  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 5014141 - 5014100
Alignment:
Q  68 atatgcataaacataaggcaagggaaggaaagtggaaattgg 109  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  5014141 atatgcataaacataaggcatgggaaggaaagtggaaattgg 5014100  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 16692988 - 16693020
Alignment:
Q  19 gtgtggcagctgccacaccagattcttgcctaa 51  Q
    |||||| ||||||||||||||||||||||||||    
T  16692988 gtgtggtagctgccacaccagattcttgcctaa 16693020  T

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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 28535306 - 28535389
Alignment:
Q  140 gtttcttctcctcttctctactctcacaatcggtttcttcttctctgctcacaaatcacaattcacaatctcctttcttctcac 223  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  28535306 gtttcttctcctcttctctactctcacaatcggtttcttcctctcttctcacaaatcacaattcacaatctcctttcttctcac 28535389  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 11463870 - 11463814
Alignment:
Q  145 ttctcctcttctctactctcacaatcg-gtttcttcttctctgctcacaaatcacaa 200  Q
    |||| |||||||||||||||| ||||| |||||||||||||| ||||||| ||||||    
T  11463870 ttcttctcttctctactctcagaatcgcgtttcttcttctcttctcacaattcacaa 11463814  T

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Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 22788360 - 22788277
Alignment:
Q  140 gtttcttctcctcttctctactctcacaatcggtttcttcttctctgctcacaaatcacaattcacaatctcctttcttctcac 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  22788360 gtttcttctcctcttctctactctcacaatcggtttcttcttctcttctcacaaatcacaattcacaatcttctttcttctcac 22788277  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 18431612 - 18431525
Alignment:
Q  140 gtttcttctcctcttctctactctcacaa----tcggtttcttcttctctgctcacaaatcacaattcacaatctcctttcttctcac 223  Q
    |||||||||||||||||||||||||||||    ||||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  18431612 gtttcttctcctcttctctactctcacaaacaatcggtttcttcttctcttctcacaaatcacaattcacaatcgtctttcttctcac 18431525  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 22788432 - 22788391
Alignment:
Q  68 atatgcataaacataaggcaagggaaggaaagtggaaattgg 109  Q
    ||||| ||||||||| ||||||||||||||||||||||||||    
T  22788432 atatgtataaacatatggcaagggaaggaaagtggaaattgg 22788391  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 18431689 - 18431649
Alignment:
Q  68 atatgcataaacataaggcaagggaaggaaagtggaaattg 108  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  18431689 atatgcataaacataaggtacgggaaggaaagtggaaattg 18431649  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 18431734 - 18431702
Alignment:
Q  19 gtgtggcagctgccacaccagattcttgcctaa 51  Q
    |||||||||||||||||||||||||| ||||||    
T  18431734 gtgtggcagctgccacaccagattctagcctaa 18431702  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 22788481 - 22788449
Alignment:
Q  19 gtgtggcagctgccacaccagattcttgcctaa 51  Q
    |||||||| ||||||||||||||||||||||||    
T  22788481 gtgtggcaactgccacaccagattcttgcctaa 22788449  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 52118439 - 52118521
Alignment:
Q  141 tttcttctcctcttctctactctcacaatcggtttcttcttctctgctcacaaatcacaattcacaatctcctttcttctcac 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  52118439 tttcttctcctcttctctactctcacaatcggtttcttcttctcttctcacaaatcacaattcacaatctcctttcctctcac 52118521  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 26555619 - 26555702
Alignment:
Q  140 gtttcttctcctcttctctactctcacaatcggtttcttcttctctgctcacaaatcacaattcacaatctcctttcttctcac 223  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  26555619 gtttcttctcctcttctcttctctcacaatcggtttcttcttctcttctcacaaatcacaattcacaatcttctttcttctcac 26555702  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 26555502 - 26555533
Alignment:
Q  19 gtgtggcagctgccacaccagattcttgccta 50  Q
    ||||||||||||||||||||||||||||||||    
T  26555502 gtgtggcagctgccacaccagattcttgccta 26555533  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 52118379 - 52118407
Alignment:
Q  81 taaggcaagggaaggaaagtggaaattgg 109  Q
    |||||||||||||||||||||||||||||    
T  52118379 taaggcaagggaaggaaagtggaaattgg 52118407  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 16916345 - 16916258
Alignment:
Q  140 gtttcttctcctcttctctactctcacaa----tcggtttcttcttctctgctcacaaatcacaattcacaatctcctttcttctcac 223  Q
    |||||||||||| ||||||||||||||||    ||||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  16916345 gtttcttctccttttctctactctcacaaacaatcggtttcttcttctcttctcacaaatcacaattcacaatcgtctttcttctcac 16916258  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 16916422 - 16916381
Alignment:
Q  68 atatgcataaacataaggcaagggaaggaaagtggaaattgg 109  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  16916422 atatgcataaacataaggcacgggaaggaaagtggaaattgg 16916381  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 46437452 - 46437539
Alignment:
Q  140 gtttcttctcctcttctctactctcacaa----tcggtttcttcttctctgctcacaaatcacaattcacaatctcctttcttctcac 223  Q
    ||||||||||||||||| |||||||||||    ||||||||||||||||| |||||||| ||||||||||||||  ||||||||||||    
T  46437452 gtttcttctcctcttctttactctcacaaacaatcggtttcttcttctcttctcacaaaacacaattcacaatcgtctttcttctcac 46437539  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 46437375 - 46437416
Alignment:
Q  68 atatgcataaacataaggcaagggaaggaaagtggaaattgg 109  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  46437375 atatgcataaacataaggcacgagaaggaaagtggaaattgg 46437416  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 424855 - 424823
Alignment:
Q  19 gtgtggcagctgccacaccagattcttgcctaa 51  Q
    |||||||||||||||||||||||||| ||||||    
T  424855 gtgtggcagctgccacaccagattctagcctaa 424823  T

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