View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7331_low_3 (Length: 546)
Name: NF7331_low_3
Description: NF7331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7331_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 19 - 530
Target Start/End: Complemental strand, 35906658 - 35906147
Alignment:
| Q |
19 |
aggatgtggtttaggtgacaatggtggcaaagattcagatggaagacaatggaatccagacaacaaatacctttcaggaggaaattcaataacatcaaaa |
118 |
Q |
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| T |
35906658 |
aggatgtggtttaggtgacaatggtggcaaagattcagatggaagacaatggaatccagacaacaaatacctttcaggaggaaattcaataacatcaaaa |
35906559 |
T |
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| Q |
119 |
gcctcgtttcaagacccttctcttttatcagaaattccatacatgtcagcgcgtgttttcacatcagaatcaacctacaaattccctattctgccaaata |
218 |
Q |
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| T |
35906558 |
gcctcgtttcaagacccttctcttttatcagaaattccatacatgtcagcgcgtgttttcacatcagaatcaacctacaaattccctattctaccaaata |
35906459 |
T |
|
| Q |
219 |
aacgttattggttaagactacatttttatccttctgtttacaacaatttgaacccatcggattcgtatttttctgtaacggcaaatggtgttacacttct |
318 |
Q |
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| T |
35906458 |
aacgttattggttaagactacatttttatccttctgtttacaacaatttgaacccatcggattcgtatttttctgtaacggcaaatggtgttgcacttct |
35906359 |
T |
|
| Q |
319 |
caacaattttagctcgtcgattacatgtcaagccttatctcaagcttatcttgatagagaatattcacttgcacctttgaattcaaatgttcttaatctt |
418 |
Q |
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| T |
35906358 |
caacaattttagctcatcgattacatgtcaagccttatctcaagcttatcttgatagagaatattcacttgcacctttgaattcaaatgttcttaatctt |
35906259 |
T |
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| Q |
419 |
acttttaagccttctgataaacacagtggtgcttttgcttttattaatggtattcaacttattcaaatgccggatttgttctttgattcaccttcgttgg |
518 |
Q |
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| T |
35906258 |
acttttaagccttctgataaacacaatggtgcttttgcttttattaatggtattcaacttattcaaatgccggatttgttgttagattcaccttcattgg |
35906159 |
T |
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| Q |
519 |
tcggttatgatg |
530 |
Q |
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| T |
35906158 |
tcggttatgatg |
35906147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 498
Target Start/End: Original strand, 47622907 - 47623252
Alignment:
| Q |
153 |
ttccatacatgtcagcgcgtgttttcacatcagaatcaacctacaaattccctattctgccaaataaacgttattggttaagactacatttttatccttc |
252 |
Q |
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|||||||||||||||| | |||||||||||||| |||| |||||||| | ||| ||| |||||||||||||| | || || || |||||||| || |
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| T |
47622907 |
ttccatacatgtcagctagaattttcacatcagaaacaacatacaaatttaatgttcagcctgataaacgttattggctcaggctccacttttatccatc |
47623006 |
T |
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| Q |
253 |
tgtttacaacaatttgaacccatcggattcgtatttttctgtaacggcaaatggtgttacacttctcaacaattttagctcgtcgattacatgtcaagcc |
352 |
Q |
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| T |
47623007 |
cctttatggaactttcaacccctccgattcatatttctctgtggctgcaaatgggattaccctcctcagcaatttcagcgcttctatcacttgtcaggcc |
47623106 |
T |
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| Q |
353 |
ttatctcaagcttatcttgatagagaatattcacttgcacctttgaattcaaatgttcttaatcttacttttaagccttctgataaacacagtggtgctt |
452 |
Q |
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| || |||||||| |||| ||||| ||||| ||||| |||||||||||| || | | | |||||| ||||| |||||||| || || | ||| ||| |
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| T |
47623107 |
ctctcacaagcttacattgacagagagtattctcttgctcctttgaattcagatactttgactcttacatttaaaccttctgacaagcaaaatgggactt |
47623206 |
T |
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| Q |
453 |
ttgcttttattaatggtattcaacttattcaaatgccggatttgtt |
498 |
Q |
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||||||| || ||||| |||||| | || |||||||| || ||||| |
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| T |
47623207 |
ttgctttcatcaatggaattcaattgatccaaatgcctgagttgtt |
47623252 |
T |
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