View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7331_low_4 (Length: 461)
Name: NF7331_low_4
Description: NF7331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7331_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 255
Target Start/End: Original strand, 26152181 - 26152426
Alignment:
| Q |
10 |
aattaattgttcataaccttgaatcagaagttattttagacaactgagaagtaatttccatctacttggttatttttcacttgttaatagactaaaactc |
109 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26152181 |
aattaattgttgataaccttgaatcagaagttattttagacaactgagaagtaatttccatctacttggttatttttcacttgttaatacactaaaactc |
26152280 |
T |
|
| Q |
110 |
aaggtacgagaacactttgttattcatctgaagctttggttattggtttagttgtgcaactgtatccatgatttgagacccttctcttcaccattctatt |
209 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26152281 |
aaggtacgaaaacactttgttattcatttgaagctttggttattggtttagttgtgtaactgtatccatgatttgagacccttctcttcaccattctatt |
26152380 |
T |
|
| Q |
210 |
tttggtggctgaatctgttatgtgctctatgtttgtgattgaatca |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26152381 |
tttggtggctgaatctgttatgtgctctatgtttgtgattgaatca |
26152426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 334 - 451
Target Start/End: Original strand, 26152422 - 26152551
Alignment:
| Q |
334 |
aatcaaagtttcatgtgacaatcataatataaatagtttgtcaac----------ttgacatcaatagtttgttaatttcttgattttttaaattctttg |
423 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26152422 |
aatcaaagtttcatgtgccaatcataatataaatagtttgtcaacagtttataacttgacatcaatagtttgttgatttcttgattttttaaattctttg |
26152521 |
T |
|
| Q |
424 |
taatttct--tttcagctttgccatctctg |
451 |
Q |
| |
|
|||||||| |||||||||||||||||||| |
|
|
| T |
26152522 |
taatttcttatttcagctttgccatctctg |
26152551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 365 - 451
Target Start/End: Original strand, 26155694 - 26155781
Alignment:
| Q |
365 |
aatagtttgtcaacttgacatcaatagtttgttaatttcttgattttttaaattctttgtaatttct--tttcagctttgccatctctg |
451 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
26155694 |
aatagtttgt-aacttcacatcaatagtttgttaatttctttattttttaaattctttgtaatttcttatttcagctttggcatctctg |
26155781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University