View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7331_low_5 (Length: 403)
Name: NF7331_low_5
Description: NF7331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7331_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 4 - 384
Target Start/End: Original strand, 33712642 - 33713021
Alignment:
| Q |
4 |
gagtttggtgtttatagcgaagttaaatatgatcatattgtctatgattctgtccaaagaagaaacnnnnnnnnnttagggactccttattcaatacatt |
103 |
Q |
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| T |
33712642 |
gagtttagtgttta-agcgaagttaaatatgatcatattgtctatgattctgtccaaagaagaaacaaaaaaaaattagggactccttattcaatacatt |
33712740 |
T |
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| Q |
104 |
gatttttgaaaagactcaacaatagaaaaatataaaattaattgaaaatcaatttctctcaatgttggacctattcaagattcattgcaccaaaatttat |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33712741 |
gatttttgaaaagactcaacaatagaaaaatataaaattaattgaaaatcaatttctctcaatgttggacctattcaagattcattgcaccaaaatttat |
33712840 |
T |
|
| Q |
204 |
tactaatgtacaacagaattaagtggacagaacaacgtgacttattcagccctaaaagagttaattaatttcagtgtatacaaggatctttatataggta |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33712841 |
tactaatgtacaacagaattaagtggacagaacaacgtgacttattaagccctaaaagagttaattaatttcagtgtatacaaggatctttatataggta |
33712940 |
T |
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| Q |
304 |
tatcttcctcttgttgtttcagcaccttcaatgtgggactgtttgtaactattttttatggcattcaaacatggaaccagg |
384 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33712941 |
tatcttcctctggttgtttcagcaccttcaatgtgggactgtttgtaactattttttatggcattcaaacatggcaccagg |
33713021 |
T |
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