View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7331_low_7 (Length: 395)
Name: NF7331_low_7
Description: NF7331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7331_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 30 - 383
Target Start/End: Original strand, 17494711 - 17495061
Alignment:
| Q |
30 |
tattattgtaaaataaacgttaagcatgcaacatgcatctgcaaccatgttggaagcatgggaaggtaaacgtggtacacgtgattcgcgctataaccct |
129 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
17494711 |
tattattgtaaaataaacattaagcatgcaacatgcatctgcaaccatgttggaagcatgggaaggtaagcgtggtacacgtgattcgtgctataaccct |
17494810 |
T |
|
| Q |
130 |
actaaaattcgatatcacatgtaacttattatttattttgtttcaaatgnnnnnnnnccttcaatgaagtagataagttacttatccacgcagannnnnn |
229 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17494811 |
actaaaattcgatatcacatgcaccttattatttattttgtttcaaatg-tttttttccttcaatgaagtagataagttacttatccacgcagatttttt |
17494909 |
T |
|
| Q |
230 |
nnnnnnnnnnnggaaggagtttatcttatccatgcagatataatgatgacattttaatatacca-aaaacaaaaattaatgacattttaatattctctct |
328 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| || ||||||||||||||||||||||||||| |
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| T |
17494910 |
ttttttgttttggaaggagtttatcttatccatgcagatata---atgacattttaatatactaccaaaaaataattaatgacattttaatattctctct |
17495006 |
T |
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| Q |
329 |
atctatttattttgtactaagtggaggattttctgtggcttaatttgtccatatt |
383 |
Q |
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| T |
17495007 |
atctatttattttgtactaagtggaggagtttctgtggcttaatttgtccatatt |
17495061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 30 - 383
Target Start/End: Complemental strand, 17558503 - 17558153
Alignment:
| Q |
30 |
tattattgtaaaataaacgttaagcatgcaacatgcatctgcaaccatgttggaagcatgggaaggtaaacgtggtacacgtgattcgcgctataaccct |
129 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
17558503 |
tattattgtaaaataaacattaagcatgcaacatgcatctgcaaccatgttggaagcatgggaaggtaagcgtggtacacgtgattcgtgctataaccct |
17558404 |
T |
|
| Q |
130 |
actaaaattcgatatcacatgtaacttattatttattttgtttcaaatgnnnnnnnnccttcaatgaagtagataagttacttatccacgcagannnnnn |
229 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17558403 |
actaaaattcgatatcacatgcaccttattatttattttgtttcaaatg-tttttttccttcaatgaagtagataagttacttatccacgcagatttttt |
17558305 |
T |
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| Q |
230 |
nnnnnnnnnnnggaaggagtttatcttatccatgcagatataatgatgacattttaatatacca-aaaacaaaaattaatgacattttaatattctctct |
328 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| || ||||||||||||||||||||||||||| |
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| T |
17558304 |
ttttttgttttggaaggagtttatcttatccatgcagatata---atgacattttaatatactaccaaaaaataattaatgacattttaatattctctct |
17558208 |
T |
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| Q |
329 |
atctatttattttgtactaagtggaggattttctgtggcttaatttgtccatatt |
383 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
17558207 |
atctatttattttgtactaagtggaggagtttctgtggcttaatttgtccatatt |
17558153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 50 - 318
Target Start/End: Original strand, 1922008 - 1922273
Alignment:
| Q |
50 |
taagcatgcaacatgcatctgcaaccatgttggaagcatgggaaggtaaacgtggtacacgtgattcgcgctataaccctactaaaattcgatatcacat |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1922008 |
taagcatgcaacatgcatctgcaaccatgttggaagcatgggaaggtaaacgtggtacacgtgattcgtgctataaccctactaaaattcgatatcacat |
1922107 |
T |
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| Q |
150 |
gtaacttattatttattttgtttcaaatgnnnnnnnnccttcaatgaagtagataagttacttatccacgcagannnnnnnnnnnnnnnnnggaaggagt |
249 |
Q |
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||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
1922108 |
gtaccttattatttattttgtttcaaatg-tttttttccttcaatgaagtagataagttacttatccacgcaaattttttttttttgttttggaaggagt |
1922206 |
T |
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| Q |
250 |
ttatcttatccatgcagatataatgatgacattttaatatacca-aaaacaaaaattaatgacattttaa |
318 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| | ||| |||||||||||||||||||| |
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| T |
1922207 |
ttatcttatccatgcagatata---atgacattttaatatactaccaaaaaaaaattaatgacattttaa |
1922273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 349 - 383
Target Start/End: Original strand, 1922275 - 1922309
Alignment:
| Q |
349 |
gtggaggattttctgtggcttaatttgtccatatt |
383 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
1922275 |
gtggaggattttctgtggcttaatttgtccatatt |
1922309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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