View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7331_low_8 (Length: 322)
Name: NF7331_low_8
Description: NF7331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7331_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 151 - 263
Target Start/End: Original strand, 32270508 - 32270620
Alignment:
| Q |
151 |
aactattcaataattaaaaacaaaggtttgaaaaagaagaagtacttgatcttgaatgattaaaaaagaagtttcaacacaaagggacaactttaaaaag |
250 |
Q |
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| T |
32270508 |
aactattcaataattaaaagcaaaggattgaaaaagaagaagtacttgatcttgaatgattaaaaaagaagtttcaacacaaagggacaactttaagaag |
32270607 |
T |
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| Q |
251 |
tggaaagaatctc |
263 |
Q |
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|||||||| |||| |
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| T |
32270608 |
tggaaagagtctc |
32270620 |
T |
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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 32270435 - 32270507
Alignment:
| Q |
22 |
aatcaaaagtgttacataattgagttcggcatattaaattgagttcggcaggttattgaatcaagacagacat |
94 |
Q |
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| T |
32270435 |
aatcaaaagtgttacataattgagttcagcagattaaattgagttcggcaggttattgaatcaagacagacat |
32270507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 12887759 - 12887699
Alignment:
| Q |
216 |
aagaagtttcaacacaaagggacaactttaaaaagtggaaagaatctctatgttttccattt |
277 |
Q |
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| T |
12887759 |
aagaagttccaacacaaaag-acaactttaataagttgaaagaatctctatgttttccattt |
12887699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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