View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7331_low_9 (Length: 317)

Name: NF7331_low_9
Description: NF7331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7331_low_9
NF7331_low_9
[»] chr2 (5 HSPs)
chr2 (1-249)||(34396118-34396365)
chr2 (245-317)||(34395973-34396045)
chr2 (43-117)||(29278161-29278235)
chr2 (43-110)||(37595274-37595341)
chr2 (167-234)||(13702643-13702711)
[»] chr4 (5 HSPs)
chr4 (43-117)||(9434032-9434106)
chr4 (43-117)||(2427044-2427118)
chr4 (247-301)||(4087091-4087145)
chr4 (247-297)||(29152517-29152567)
chr4 (245-301)||(39166189-39166245)
[»] chr1 (3 HSPs)
chr1 (43-115)||(39155297-39155369)
chr1 (44-117)||(30095383-30095456)
chr1 (40-70)||(17387150-17387180)
[»] chr7 (3 HSPs)
chr7 (43-111)||(24449084-24449152)
chr7 (43-110)||(3198854-3198921)
chr7 (41-70)||(45917328-45917357)
[»] chr5 (2 HSPs)
chr5 (47-110)||(3095944-3096007)
chr5 (268-301)||(241485-241518)
[»] chr8 (1 HSPs)
chr8 (46-112)||(1359080-1359146)
[»] chr3 (3 HSPs)
chr3 (41-70)||(39826424-39826453)
chr3 (41-69)||(27705103-27705131)
chr3 (41-69)||(27717340-27717368)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 34396365 - 34396118
Alignment:
Q  1 aaatttaaagagatataatacaactggcaagaaatgtaatatattttattatttgatcaagaattcataaagtatttacattactataacaattattaca 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34396365 aaatttaaagagatataatacaactggcaagaaatg-aatatattttattatttgatcaagaattcataaaatatttacattactataacaattattaca 34396267  T
Q  101 acaaaatattacacacccaatctaaagttgtagagcaaaaagattgcgagagaaataggaaaaggcttgtcatccctcccacacatcctctaaagggagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34396266 acaaaatattacacacccaatctaaagttgtagagcaaaaagattgcgagagaaataggaaaaggcttgtcatccctcccgcacatcctctaaagggagg 34396167  T
Q  201 agacgggaatacaagatgatgagtgggagaaggagactctaatgagaaa 249  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34396166 agatgggaatacaagatgatgagtgggagaaggagactctaatgagaaa 34396118  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 34396045 - 34395973
Alignment:
Q  245 agaaaagtatgaaagaaaaagatagaatgtgagttggaatgtgaaattgtgaagaatatatgaatgggtattt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34396045 agaaaagtatgaaagaaaaagatagaatgtgagttggaatgtgaaattgtgaagaatatatgaatgggtattt 34395973  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 29278161 - 29278235
Alignment:
Q  43 attttattatttgatcaagaattcataaagtatttacattactataacaattattacaacaaaatattacacacc 117  Q
    |||||||| |||||||||||||||||||   |||| |||||  |||||| ||||||||||||||||||| |||||    
T  29278161 attttattctttgatcaagaattcataatacattttcattaacataacacttattacaacaaaatattagacacc 29278235  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 37595274 - 37595341
Alignment:
Q  43 attttattatttgatcaagaattcataaagtatttacattactataacaattattacaacaaaatatt 110  Q
    ||||||||||||||||||||||||||||   ||||||||||  |||| | |||||| |||||| ||||    
T  37595274 attttattatttgatcaagaattcataatacatttacattaacataatatttattaaaacaaattatt 37595341  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 13702643 - 13702711
Alignment:
Q  167 ttgtcatccctcccacacatcctctaaagggaggagacgggaatacaagatga-tgagtgggagaagga 234  Q
    |||||||||||| | |||||||||  ||||||| | | ||||||||||||||| ||||||||| |||||    
T  13702643 ttgtcatccctctcgcacatcctcggaagggagaatatgggaatacaagatgattgagtgggataagga 13702711  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 9434032 - 9434106
Alignment:
Q  43 attttattatttgatcaagaattcataaagtatttacattactataacaattattacaacaaaatattacacacc 117  Q
    |||||| |||| ||||||||||||||||   ||||| ||||| |||||| ||||||||||||||||||| |||||    
T  9434032 attttactattcgatcaagaattcataatacatttagattaccataacacttattacaacaaaatattagacacc 9434106  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 2427118 - 2427044
Alignment:
Q  43 attttattatttgatcaagaattcataaagtatttacattactataacaattattacaacaaaatattacacacc 117  Q
    |||||||||||||||||| |||| ||||  |||||| ||||  ||||||| ||| |||||||||| ||| |||||    
T  2427118 attttattatttgatcaataattaataatatatttatattaacataacaaatatcacaacaaaattttagacacc 2427044  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 4087091 - 4087145
Alignment:
Q  247 aaaagtatgaaagaaaaagatagaatgtgagttggaatgtgaaattgtgaagaat 301  Q
    ||||||| |||||||||  | |||||||||||| ||||| |||||||||||||||    
T  4087091 aaaagtaagaaagaaaagaagagaatgtgagtttgaatgagaaattgtgaagaat 4087145  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 29152567 - 29152517
Alignment:
Q  247 aaaagtatgaaagaaaaagatagaatgtgagttggaatgtgaaattgtgaa 297  Q
    ||||||| ||||||||| || ||||||||| |||||||| |||||||||||    
T  29152567 aaaagtaagaaagaaaaggagagaatgtgacttggaatgagaaattgtgaa 29152517  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 39166245 - 39166189
Alignment:
Q  245 agaaaagtatgaaagaaaaagatagaatgtgagttggaatgtgaaattgtgaagaat 301  Q
    ||||| ||| ||||||| |||| | || ||||||||||||| |||||||||||||||    
T  39166245 agaaaggtaagaaagaagaagaaaaaaagtgagttggaatgagaaattgtgaagaat 39166189  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 39155297 - 39155369
Alignment:
Q  43 attttattatttgatcaagaattcataaagtatttacattactataacaattattacaacaaaatattacaca 115  Q
    ||||||| ||||||||||||||||||||   ||| ||||||  |||||| |||||||||||||||| ||||||    
T  39155297 attttatcatttgatcaagaattcataatacattcacattaacataacacttattacaacaaaatagtacaca 39155369  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 30095383 - 30095456
Alignment:
Q  44 ttttattatttgatcaagaattcataaagtatttacattactataacaattattacaacaaaatattacacacc 117  Q
    ||||||||||||||||| |||||||||   ||| |||||| ||||||  |||||||||||| |||||| |||||    
T  30095383 ttttattatttgatcaataattcataatacattgacattaatataacgcttattacaacaagatattagacacc 30095456  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 70
Target Start/End: Original strand, 17387150 - 17387180
Alignment:
Q  40 tatattttattatttgatcaagaattcataa 70  Q
    |||||||||||||||||||||||||||||||    
T  17387150 tatattttattatttgatcaagaattcataa 17387180  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 24449084 - 24449152
Alignment:
Q  43 attttattatttgatcaagaattcataaagtatttacattactataacaattattacaacaaaatatta 111  Q
    |||||||||||| || ||||||| ||||  |||||||||||  |||||| |||||||||||| ||||||    
T  24449084 attttattattttattaagaatttataatatatttacattaacataacatttattacaacaacatatta 24449152  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 3198921 - 3198854
Alignment:
Q  43 attttattatttgatcaagaattcataaagtatttacattactataacaattattacaacaaaatatt 110  Q
    ||||||||||||||||||||||||||||  || ||||||||  ||||   ||||||||||||| ||||    
T  3198921 attttattatttgatcaagaattcataatatagttacattaacataatgtttattacaacaaactatt 3198854  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 70
Target Start/End: Complemental strand, 45917357 - 45917328
Alignment:
Q  41 atattttattatttgatcaagaattcataa 70  Q
    ||||||||||||||||||||||||||||||    
T  45917357 atattttattatttgatcaagaattcataa 45917328  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 3095944 - 3096007
Alignment:
Q  47 tattatttgatcaagaattcataaagtatttacattactataacaattattacaacaaaatatt 110  Q
    ||||||||||||||||||||||||  |||||| ||||  |||| | ||||||||||||| ||||    
T  3095944 tattatttgatcaagaattcataatatatttaaattaacataatatttattacaacaaattatt 3096007  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 301
Target Start/End: Complemental strand, 241518 - 241485
Alignment:
Q  268 agaatgtgagttggaatgtgaaattgtgaagaat 301  Q
    |||||||||||||||||| |||||||||||||||    
T  241518 agaatgtgagttggaatgagaaattgtgaagaat 241485  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 1359146 - 1359080
Alignment:
Q  46 ttattatttgatcaagaattcataaagtatttacattactataacaattattacaacaaaatattac 112  Q
    |||||| ||||||||||||||||||   ||||||||||  |||||  ||||||| ||||||||||||    
T  1359146 ttattaattgatcaagaattcataatacatttacattaacataacgcttattacgacaaaatattac 1359080  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 70
Target Start/End: Complemental strand, 39826453 - 39826424
Alignment:
Q  41 atattttattatttgatcaagaattcataa 70  Q
    ||||||||||||||||||||||||||||||    
T  39826453 atattttattatttgatcaagaattcataa 39826424  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 69
Target Start/End: Original strand, 27705103 - 27705131
Alignment:
Q  41 atattttattatttgatcaagaattcata 69  Q
    |||||||||||||||||||||||||||||    
T  27705103 atattttattatttgatcaagaattcata 27705131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 69
Target Start/End: Original strand, 27717340 - 27717368
Alignment:
Q  41 atattttattatttgatcaagaattcata 69  Q
    |||||||||||||||||||||||||||||    
T  27717340 atattttattatttgatcaagaattcata 27717368  T

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