View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7332_high_10 (Length: 556)

Name: NF7332_high_10
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7332_high_10
NF7332_high_10
[»] chr3 (24 HSPs)
chr3 (285-549)||(42480216-42480478)
chr3 (1-293)||(42481169-42481458)
chr3 (43-159)||(4169098-4169214)
chr3 (50-150)||(31545625-31545725)
chr3 (51-159)||(44080257-44080364)
chr3 (49-159)||(1705669-1705779)
chr3 (50-159)||(42637956-42638065)
chr3 (50-159)||(3823651-3823761)
chr3 (84-139)||(23163349-23163404)
chr3 (68-158)||(5341877-5341967)
chr3 (69-146)||(27335402-27335479)
chr3 (50-156)||(3785965-3786071)
chr3 (66-147)||(13358108-13358189)
chr3 (43-159)||(22432330-22432446)
chr3 (50-150)||(26308640-26308740)
chr3 (55-134)||(27079301-27079380)
chr3 (55-134)||(27085098-27085177)
chr3 (48-134)||(27707698-27707784)
chr3 (54-119)||(11501310-11501375)
chr3 (50-147)||(19624317-19624414)
chr3 (68-159)||(9710742-9710832)
chr3 (109-147)||(11509915-11509953)
chr3 (79-127)||(23163788-23163836)
chr3 (59-103)||(39126219-39126263)
[»] chr6 (12 HSPs)
chr6 (51-157)||(3620761-3620867)
chr6 (50-159)||(10304700-10304809)
chr6 (3-159)||(3222431-3222588)
chr6 (3-155)||(138668-138820)
chr6 (3-155)||(146689-146841)
chr6 (68-159)||(33815034-33815125)
chr6 (50-159)||(22608360-22608469)
chr6 (50-150)||(9068415-9068514)
chr6 (52-147)||(2834974-2835069)
chr6 (50-105)||(24386266-24386321)
chr6 (43-97)||(2430600-2430654)
chr6 (70-143)||(9474646-9474718)
[»] chr2 (7 HSPs)
chr2 (4-159)||(1400728-1400883)
chr2 (50-156)||(30906051-30906157)
chr2 (50-155)||(43900532-43900637)
chr2 (57-159)||(45305967-45306068)
chr2 (50-146)||(33667328-33667424)
chr2 (7-159)||(28527280-28527431)
chr2 (50-146)||(7378470-7378564)
[»] chr7 (11 HSPs)
chr7 (4-155)||(21589627-21589778)
chr7 (50-159)||(31303453-31303562)
chr7 (50-147)||(22740659-22740756)
chr7 (50-155)||(28804990-28805094)
chr7 (43-159)||(5083785-5083900)
chr7 (50-149)||(18312837-18312935)
chr7 (68-155)||(20556770-20556857)
chr7 (50-155)||(4290831-4290935)
chr7 (4-147)||(21548464-21548607)
chr7 (69-146)||(32964775-32964852)
chr7 (50-115)||(5174910-5174975)
[»] chr8 (14 HSPs)
chr8 (50-159)||(5321962-5322071)
chr8 (50-159)||(5573780-5573888)
chr8 (50-159)||(38606828-38606937)
chr8 (50-149)||(15714695-15714794)
chr8 (50-155)||(1240901-1241005)
chr8 (68-159)||(31273580-31273671)
chr8 (71-155)||(29367076-29367160)
chr8 (91-156)||(32959563-32959628)
chr8 (59-159)||(31596795-31596894)
chr8 (50-159)||(1251477-1251585)
chr8 (68-149)||(26493355-26493435)
chr8 (50-97)||(24575907-24575954)
chr8 (43-105)||(26914684-26914746)
chr8 (113-159)||(33286217-33286263)
[»] chr1 (9 HSPs)
chr1 (43-155)||(29677078-29677190)
chr1 (50-147)||(34364243-34364340)
chr1 (50-158)||(38951906-38952016)
chr1 (54-150)||(42604227-42604323)
chr1 (68-159)||(29167828-29167918)
chr1 (50-97)||(2569970-2570017)
chr1 (69-147)||(9468120-9468199)
chr1 (68-159)||(25238477-25238567)
chr1 (70-159)||(517433-517522)
[»] chr5 (13 HSPs)
chr5 (43-159)||(35922732-35922848)
chr5 (11-144)||(42034771-42034904)
chr5 (6-158)||(33958936-33959088)
chr5 (50-148)||(13312609-13312707)
chr5 (55-159)||(31189578-31189681)
chr5 (50-159)||(22169457-22169566)
chr5 (111-159)||(36169394-36169442)
chr5 (54-127)||(19621477-19621550)
chr5 (50-159)||(38521968-38522076)
chr5 (50-155)||(43461701-43461806)
chr5 (69-146)||(7156105-7156182)
chr5 (72-135)||(43262708-43262771)
chr5 (69-146)||(30704398-30704476)
[»] chr4 (14 HSPs)
chr4 (50-158)||(33179759-33179867)
chr4 (50-159)||(33249616-33249725)
chr4 (50-159)||(1966833-1966941)
chr4 (50-159)||(16583596-16583705)
chr4 (48-136)||(17633339-17633427)
chr4 (55-150)||(35544425-35544519)
chr4 (69-146)||(24669197-24669274)
chr4 (50-159)||(9809074-9809183)
chr4 (55-159)||(8740796-8740899)
chr4 (50-150)||(14351071-14351171)
chr4 (68-159)||(55666844-55666934)
chr4 (71-159)||(9810760-9810848)
chr4 (112-159)||(20874833-20874880)
chr4 (109-147)||(19596794-19596832)
[»] scaffold1126 (1 HSPs)
scaffold1126 (4-159)||(163-318)
[»] scaffold0024 (1 HSPs)
scaffold0024 (69-146)||(112158-112235)
[»] scaffold0251 (1 HSPs)
scaffold0251 (68-159)||(10633-10724)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 285 - 549
Target Start/End: Complemental strand, 42480478 - 42480216
Alignment:
Q  285 agttaccacatatgcacgaattctcttaggggtccacattgtggtggttgagtgggacccacttgtaatgtatggcccacatacaccaaactcaaccaaa 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  42480478 agttaccacatatgcacgaattctcttaggggtccacattgtggtggttgagtgggacccaattgtaatgtatggcccagatacaccaaactcaaccaaa 42480379  T
Q  385 caatttctcataaagttctatataatagcaatccactttgcatcattgaggtcacactcacacacaccttcattcttctacattcttcaaatcaccacta 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42480378 caatttctcataaagttctatataatagcaatccactttgcatcattaaggtcacactcacacacaccttcattcttccacattcttcaaatcaccacta 42480279  T
Q  485 caatctcacagaaacctcatcaatcacaaccatgggttcaacaggtgaaactcaaataacaccaa 549  Q
    ||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42480278 caatct--caaaaacctcatcaatcacaaccatgggttcaacaggtgaaactcaaataacaccaa 42480216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 42481458 - 42481169
Alignment:
Q  1 aatagttaaccaaatatatagtctgtgtaatcacannnnnnnagttacatgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatg 100  Q
    |||||||||||| |||||||||||| |||||||||       ||||||||||||| |||||||  | |||||||||| ||||||||||  ||||||||||    
T  42481458 aatagttaaccagatatatagtctgagtaatcacatttttttagttacatgaccattattttttcagaatttatttggttaactaagtagaaaaataatg 42481359  T
Q  101 atcacatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcacgcaaactatatatcttgtttattgaaattttcaaattcaatagtg 200  Q
     |||| ||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||| ||||||||||      |||| ||||    
T  42481358 gtcacgtacattttagttgtgtgaccatatttttcagtttttaaatagtggtcacgcaaactatatatcttgttaattgaaattt------tcaacagtg 42481265  T
Q  201 atac-----aaaggggtatctaccgatattgttctagttatactttttgagtataagtggtcgctatggactatggatgtatataacccagttaccac 293  Q
    ||||     |||  ||||||||| ||| |||||  ||||||| | | ||||| |||||||||| |||||||||||||||  |||||||||||||||||    
T  42481264 atacacattaaaaaggtatctactgatcttgttacagttatattctgtgagtctaagtggtcggtatggactatggatg--tataacccagttaccac 42481169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 4169098 - 4169214
Alignment:
Q  43 agttacatgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttct 142  Q
    |||| |||||| |||||||||  | |||||||||| |||||||| || ||||||| || ||||  |||||||||||| || |||| ||||||||||||||    
T  4169098 agttgcatgactactattttttcagaatttatttggttaactaaatggaaaaatagtggtcacgcacattttagttgcgttaccacatttttcagcttct 4169197  T
Q  143 aaatagtgatcacgcaa 159  Q
    |||||||| ||||||||    
T  4169198 aaatagtggtcacgcaa 4169214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 31545725 - 31545625
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    ||||||||||||||| | |||||||||  ||||||||||  ||||||| || |||   |||||||||||||||||||| |||||||||||||||||||||    
T  31545725 tgaccactatttttccagaatttattttgttaactaagtagaaaaatagtggtcatgcacattttagttgtgtgaccacatttttcagcttctaaatagt 31545626  T
Q  150 g 150  Q
    |    
T  31545625 g 31545625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 44080364 - 44080257
Alignment:
Q  51 gaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagtg 150  Q
    |||||||||||||| ||||||| |||| ||||||||||| ||||||| ||  |||  ||||||||||| |||||||| |||||||| |||||||||||||    
T  44080364 gaccactatttttccaaaatttttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttcaacttctaaatagtg 44080266  T
Q  151 atcacgcaa 159  Q
     ||||||||    
T  44080265 gtcacgcaa 44080257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 1705669 - 1705779
Alignment:
Q  49 atgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatag 148  Q
    |||||||||| ||||| | || ||||||| ||||||||| | ||||||| || ||||   |||||||||||  |||||||||||||||||||||||||||    
T  1705669 atgaccactagttttccagaaattatttggttaactaaggggaaaaatagtggtcacgcgcattttagttgcatgaccatatttttcagcttctaaatag 1705768  T
Q  149 tgatcacgcaa 159  Q
    || ||||||||    
T  1705769 tggtcacgcaa 1705779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 42637956 - 42638065
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    ||||||||||||||  | |||||||||| ||||||||||  ||||||| || | ||   ||||||||||| ||||||| |||||||||||||||||||||    
T  42637956 tgaccactattttttcagaatttatttggttaactaagttgaaaaatagtggttacgcgcattttagttgcgtgaccacatttttcagcttctaaatagt 42638055  T
Q  150 gatcacgcaa 159  Q
    | ||||||||    
T  42638056 ggtcacgcaa 42638065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 3823761 - 3823651
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccata--tttttcagcttctaaata 147  Q
    ||||||||||||||| | |||||||||| ||||||||||| ||||| | || |||||  ||||||||||| |||||||||  ||||||||||| ||||||    
T  3823761 tgaccactatttttccataatttatttggttaactaagtggaaaaa-agtggtcacacgcattttagttgcgtgaccatatttttttcagcttataaata 3823663  T
Q  148 gtgatcacgcaa 159  Q
    ||| ||||||||    
T  3823662 gtggtcacgcaa 3823651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 23163404 - 23163349
Alignment:
Q  84 taagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagct 139  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  23163404 taagtgaaaaaataatgatcacgtgcattttagttgtgtgaccatatttttcagct 23163349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 5341967 - 5341877
Alignment:
Q  68 aatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcacgca 158  Q
    |||||||||| ||||||||||| ||||||| || ||| ||  ||||||||||| |||||| |||||||| ||||||||||||| |||||||    
T  5341967 aatttatttggttaactaagtggaaaaatagtggtcatatgtattttagttgtatgaccacatttttcaacttctaaatagtggtcacgca 5341877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 27335402 - 27335479
Alignment:
Q  69 atttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaat 146  Q
    ||||||||| ||||||||||| ||||||| || |||| |  |||||||||||||||||| ||||||||||||||||||    
T  27335402 atttatttggttaactaagtggaaaaatagtggtcacgtgtattttagttgtgtgaccacatttttcagcttctaaat 27335479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 50 - 156
Target Start/End: Complemental strand, 3786071 - 3785965
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccata-tttttcagcttctaaatag 148  Q
    ||||||||||||||| | |||||||||| ||||||||||| ||||| | || ||||   ||||||||||| ||||||||| ||||||||||| |||||||    
T  3786071 tgaccactatttttccataatttatttggttaactaagtggaaaaa-agtggtcacgcgcattttagttgcgtgaccatattttttcagcttataaatag 3785973  T
Q  149 tgatcacg 156  Q
    || |||||    
T  3785972 tggtcacg 3785965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 13358108 - 13358189
Alignment:
Q  66 aaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaata 147  Q
    |||||||||||| ||||||| ||| ||||||| || | ||   ||||||| |||||||||||||||||||||||||||||||    
T  13358108 aaaatttatttggttaactatgtggaaaaatagtggtaacgcgcattttaattgtgtgaccatatttttcagcttctaaata 13358189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 43 - 159
Target Start/End: Complemental strand, 22432446 - 22432330
Alignment:
Q  43 agttacatgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttct 142  Q
    |||| ||||||||||||||||  | |||||||||| | ||||| ||| ||||||| ||  ||||  |||||||||||  |||||| |||||||||||| |    
T  22432446 agttgcatgaccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttcagctttt 22432347  T
Q  143 aaatagtgatcacgcaa 159  Q
    ||||||||  |||||||    
T  22432346 aaatagtggacacgcaa 22432330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 26308640 - 26308740
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    ||||||||| ||||| | |||||||||| |||| |||||| ||||||| || ||||   ||||||| ||| ||||||| ||| |||||||||||||||||    
T  26308640 tgaccactaattttccagaatttatttggttaagtaagtggaaaaatagtggtcacgcgcattttaattgcgtgaccacattattcagcttctaaatagt 26308739  T
Q  150 g 150  Q
    |    
T  26308740 g 26308740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 27079301 - 27079380
Alignment:
Q  55 actatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatattttt 134  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||| ||||   |||||||| |  ||||||| ||||||    
T  27079301 actatttttctataatttatttgattaactaagtggaaaaatgatggtcacgcgcattttagctacgtgaccacattttt 27079380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 27085098 - 27085177
Alignment:
Q  55 actatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatattttt 134  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||| ||||   |||||||| |  ||||||| ||||||    
T  27085098 actatttttctataatttatttgattaactaagtggaaaaatgatggtcacgcgcattttagctacgtgaccacattttt 27085177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 27707784 - 27707698
Alignment:
Q  48 catgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatattttt 134  Q
    |||| |||||||||||| | |||||||||| ||||  ||||||||||||| || |||   |||||||||||||| ||||| ||||||    
T  27707784 catgtccactatttttccagaatttatttggttaatcaagtgaaaaaatagtggtcatgcacattttagttgtgcgaccacattttt 27707698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 11501375 - 11501310
Alignment:
Q  54 cactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttg 119  Q
    |||||||||| ||||||||||||| |||||||| || ||||||| || ||||  ||||||||||||    
T  11501375 cactatttttttaaaatttatttggttaactaattggaaaaatagtggtcacgcacattttagttg 11501310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 19624414 - 19624317
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaata 147  Q
    ||||||| ||||||| | ||||||| || ||||||||||| ||||||| || |||| | ||||||||||| ||| ||| || ||| ||||| ||||||    
T  19624414 tgaccacaatttttccagaatttatgtggttaactaagtggaaaaatagtggtcacgtgcattttagttgggtggccacatattttagcttataaata 19624317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 9710742 - 9710832
Alignment:
Q  68 aatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcacgcaa 159  Q
    |||||||||| ||||||||||| ||||||| || |||  |  | |||||||| ||||||| | |||||||||||||| ||||| ||||||||    
T  9710742 aatttatttggttaactaagtggaaaaatagtggtcaagtgta-tttagttgcgtgaccacagttttcagcttctaagtagtggtcacgcaa 9710832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 147
Target Start/End: Complemental strand, 11509953 - 11509915
Alignment:
Q  109 cattttagttgtgtgaccatatttttcagcttctaaata 147  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  11509953 cattttagttgcgtgaccacatttttcagcttctaaata 11509915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 23163836 - 23163788
Alignment:
Q  79 ttaactaagtgaaaaaataatgatcacatacattttagttgtgtgacca 127  Q
    ||||||||||||| ||||| || |||| ||||||||||||| |||||||    
T  23163836 ttaactaagtgaagaaatagtggtcacgtacattttagttgcgtgacca 23163788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 39126263 - 39126219
Alignment:
Q  59 tttttctaaaatttatttgattaactaagtgaaaaaataatgatc 103  Q
    ||||| ||||||||||||| ||||||||||| ||||||| |||||    
T  39126263 tttttttaaaatttatttggttaactaagtggaaaaatagtgatc 39126219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 3620761 - 3620867
Alignment:
Q  51 gaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagtg 150  Q
    |||||||||||||  | |||||||||| ||||||||||||||||||| || ||||||| ||||||||||||||| || |||||||| |||||||||||||    
T  3620761 gaccactattttttcagaatttatttggttaactaagtgaaaaaatagtggtcacatatattttagttgtgtgatcacatttttcaacttctaaatagtg 3620860  T
Q  151 atcacgc 157  Q
    |||||||    
T  3620861 atcacgc 3620867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 10304700 - 10304809
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    |||||||| |||||| | |||||||||| ||||||||||||||||||| || ||||   ||||||||||| |||||| |||||||| |||||||||||||    
T  10304700 tgaccactttttttccagaatttatttggttaactaagtgaaaaaatagtggtcacgcgcattttagttgcgtgaccgtatttttctgcttctaaatagt 10304799  T
Q  150 gatcacgcaa 159  Q
    ||||||||||    
T  10304800 gatcacgcaa 10304809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 3222588 - 3222431
Alignment:
Q  3 tagttaaccaaatatatagtctgtgtaatcacannnnnnnagttacatgaccactat-ttttctaaaatttatttgattaactaagtgaaaaaataatga 101  Q
    ||||||| ||||||||| |||||||| | ||||       |||||| |||||||||| ||||| | |||||||||| ||||||||||| ||||||| ||     
T  3222588 tagttaatcaaatatatggtctgtgtgaccacatttttctagttacgtgaccactatattttccagaatttatttggttaactaagtggaaaaatagtgg 3222489  T
Q  102 tcacatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcacgcaa 159  Q
    |||| ||||||||||||| ||||||  |||||||||| | ||||||||| ||||||||    
T  3222488 tcacgtacattttagttgcgtgaccgcatttttcagcatttaaatagtggtcacgcaa 3222431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 138668 - 138820
Alignment:
Q  3 tagttaaccaaatatatagtctgtgtaatcacannnnnnnagttacatgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgat 102  Q
    ||||||||||||||||| ||||||||   ||||       |||| | ||||||||||||||  | |||||||||| || |||||||| ||||||| || |    
T  138668 tagttaaccaaatatatggtctgtgtggccacattttcttagttgcgtgaccactattttttcagaatttatttggttgactaagtggaaaaatagtggt 138767  T
Q  103 cacatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcac 155  Q
    | |  ||| |||||||| ||||||| |||||||||||||||||||||| ||||    
T  138768 cgcgcacaatttagttgcgtgaccacatttttcagcttctaaatagtggtcac 138820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 146689 - 146841
Alignment:
Q  3 tagttaaccaaatatatagtctgtgtaatcacannnnnnnagttacatgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgat 102  Q
    ||||||||||||||||| ||||||||   ||||       |||| | ||||||||||||||  | |||||||||| || |||||||| ||||||| || |    
T  146689 tagttaaccaaatatatggtctgtgtggccacattttcttagttgcgtgaccactattttttcagaatttatttggttgactaagtggaaaaatagtggt 146788  T
Q  103 cacatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcac 155  Q
    | |  ||| |||||||| ||||||| |||||||||||||||||||||| ||||    
T  146789 cgcgcacaatttagttgcgtgaccacatttttcagcttctaaatagtggtcac 146841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 33815034 - 33815125
Alignment:
Q  68 aatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcacgcaa 159  Q
    |||||||||| ||||||||||| ||||||  || ||||   ||||||||||| ||||||| |||||||||||||||||||||| ||||||||    
T  33815034 aatttatttggttaactaagtggaaaaatggtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaa 33815125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 22608469 - 22608360
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    ||||||||| ||||  | || |||||||||||||||| | |||||||| || |||   ||||||||||||  |||||| |||||||||||||||||||||    
T  22608469 tgaccactaatttttcagaaattatttgattaactaattcaaaaaatagtggtcatgcacattttagttgcatgaccacatttttcagcttctaaatagt 22608370  T
Q  150 gatcacgcaa 159  Q
    | ||||||||    
T  22608369 ggtcacgcaa 22608360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 9068514 - 9068415
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    ||||||||||||||| | || ||||||| ||| ||||||| ||||||| | |||||   |||||||| |||||||||| |||||||||||| ||||||||    
T  9068514 tgaccactatttttccagaacttatttgttta-ctaagtggaaaaatagtaatcacgcgcattttagatgtgtgaccacatttttcagcttttaaatagt 9068416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 2835069 - 2834974
Alignment:
Q  52 accactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaata 147  Q
    ||||||||||||| | |||||||||  ||| ||||||| |||||||||| ||||    ||||||||||  ||||||||||||||||||| ||||||    
T  2835069 accactatttttccataatttatttagttagctaagtggaaaaataatggtcacgcgtattttagttgcatgaccatatttttcagcttttaaata 2834974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 24386266 - 24386321
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcac 105  Q
    ||||||||||| ||||  |||||||||| |||||||||||||||| || |||||||    
T  24386266 tgaccactattattcttgaatttatttggttaactaagtgaaaaagtagtgatcac 24386321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 2430600 - 2430654
Alignment:
Q  43 agttacatgaccactatttttctaaaatttatttgattaactaagtgaaaaaata 97  Q
    |||| ||||||||||||||||  | |||||||||| ||||||||||| |||||||    
T  2430600 agttgcatgaccactattttttcagaatttatttggttaactaagtggaaaaata 2430654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 9474718 - 9474646
Alignment:
Q  70 tttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttcta 143  Q
    |||||||| ||||||||||||||||||| || |||||  ||||||| ||  ||||||| |||||| ||||||||    
T  9474718 tttatttggttaactaagtgaaaaaatagtggtcacacgcatttta-tttcgtgaccacattttttagcttcta 9474646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 1400728 - 1400883
Alignment:
Q  4 agttaaccaaatatatagtctgtgtaatcacannnnnnnagttacatgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatc 103  Q
    |||||||||||||||| || ||||| | ||||       |||| | ||||||||||||||| | |||||||||| ||||||||||| ||||||| |||||    
T  1400728 agttaaccaaatatatggtatgtgtgaccacattttttaagttgcgtgaccactatttttccataatttatttggttaactaagtggaaaaatagtgatc 1400827  T
Q  104 acatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcacgcaa 159  Q
    ||   |||||| |||||||||||| |||||||||||||||||||||| ||||||||    
T  1400828 acgcgcatttttgttgtgtgaccacatttttcagcttctaaatagtggtcacgcaa 1400883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 30906051 - 30906157
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    |||||||||| |||| | |||||||||| ||||||||||| ||||||| || ||||   ||||||||||| ||||||| |||||||||| | ||||||||    
T  30906051 tgaccactatgtttccataatttatttgcttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcatttaaatagt 30906150  T
Q  150 gatcacg 156  Q
    | |||||    
T  30906151 ggtcacg 30906157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 50 - 155
Target Start/End: Complemental strand, 43900637 - 43900532
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    ||||| ||||||||  | |||||||||| |||||||| |  ||||||| || |||| | ||||||||||| ||||||| |||||||||||||||||||||    
T  43900637 tgacccctattttttcagaatttatttggttaactaaatagaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagt 43900538  T
Q  150 gatcac 155  Q
    | ||||    
T  43900537 ggtcac 43900532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 57 - 159
Target Start/End: Complemental strand, 45306068 - 45305967
Alignment:
Q  57 tatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcacg 156  Q
    ||||||| || |||||||| | ||||||||||| ||||||| || ||||  |||||||||||| ||| ||| |||||||||||| ||||| ||| |||||    
T  45306068 tatttttttagaatttattcggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtggccacatttttcagcttttaaat-gtggtcacg 45305970  T
Q  157 caa 159  Q
    |||    
T  45305969 caa 45305967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 33667424 - 33667328
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaat 146  Q
    ||||||||||||||  | ||| |||||| ||||||||||| ||||||| || | ||  |||||||| ||| ||||||| |||||||| |||||||||    
T  33667424 tgaccactattttttcagaatatatttggttaactaagtggaaaaatagtggttacgcacattttaattgcgtgaccacatttttcaacttctaaat 33667328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 159
Target Start/End: Original strand, 28527280 - 28527431
Alignment:
Q  7 taaccaaatatatagtctgtgtaatcacannnnnnnagttacatgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcaca 106  Q
    ||||||||||||| |||||||| | ||||       |||| | ||||||||||||||| | |||||||||| |||||||| || ||||||| || |||||    
T  28527280 taaccaaatatatggtctgtgtgaccacatttttttagttgcgtgaccactatttttccagaatttatttggttaactaattggaaaaatagtggtcaca 28527379  T
Q  107 tacattttagttgtgtgaccatatttttcagcttctaaatagtgatcacgcaa 159  Q
      ||| ||||||  ||||| | ||||| ||||||||||||  || ||||||||    
T  28527380 cgcatgttagtt-cgtgacaacattttccagcttctaaattatggtcacgcaa 28527431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 146
Target Start/End: Original strand, 7378470 - 7378564
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaat 146  Q
    |||| ||||||||| ||||||||| | | |||| |||||| || |||| || ||||| |||||||||||| || ||||||||||| |||||||||||    
T  7378470 tgactactatttttttaaaatttaatgg-ttaattaagtggaataatagtggtcacacacattttagttgcgtcaccatattttt-agcttctaaat 7378564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 21589778 - 21589627
Alignment:
Q  4 agttaaccaaatatatagtctgtgtaatcacannnnnnnagttacatgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatc 103  Q
    ||||| |||||||||| |||||||| | ||||       |||| ||||||||||||||||| | || |||||||||||| |||||| ||||||| || ||    
T  21589778 agttatccaaatatatggtctgtgtgaccacatttttttagttgcatgaccactatttttccagaacttatttgattaattaagtggaaaaatagtggtc 21589679  T
Q  104 acatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcac 155  Q
    |||  |||||||||||  |||||| |||||||||||||||||||||||||||    
T  21589678 acacgcattttagttgcatgaccacatttttcagcttctaaatagtgatcac 21589627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 31303562 - 31303453
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    |||||||||| |||| | |||||||||| ||||||||||| ||||||| || ||||  ||||||||||||  |||||| |||||||||||||||||||||    
T  31303562 tgaccactatgtttccagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcatgaccacatttttcagcttctaaatagt 31303463  T
Q  150 gatcacgcaa 159  Q
    | ||||||||    
T  31303462 ggtcacgcaa 31303453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 22740659 - 22740756
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaata 147  Q
    |||| |||||||||  | |||||||||| ||||||||||| |||||||||||||||  | |||||||||| |||||||||||||||||||| ||||||    
T  22740659 tgactactattttttcagaatttatttggttaactaagtggaaaaataatgatcacgcatattttagttgcgtgaccatatttttcagcttttaaata 22740756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 155
Target Start/End: Original strand, 28804990 - 28805094
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    |||||||||| |||| | |||||||||| ||||||||||| ||||||| || || |   |||||| |||||||||||| |||||||||||||||||||||    
T  28804990 tgaccactatatttccataatttatttggttaactaagtggaaaaatagtggtc-cgcgcattttggttgtgtgaccacatttttcagcttctaaatagt 28805088  T
Q  150 gatcac 155  Q
    ||||||    
T  28805089 gatcac 28805094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 5083785 - 5083900
Alignment:
Q  43 agttacatgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttct 142  Q
    |||||| ||||||||||||||||| |||||||||  ||||| ||||  ||||||| || ||||   ||||| ||||| |||||||||||||||| |||||    
T  5083785 agttacgtgaccactatttttctagaatttatttcgttaacaaagttgaaaaatagtggtcacccgcattt-agttgcgtgaccatatttttcaacttct 5083883  T
Q  143 aaatagtgatcacgcaa 159  Q
    |||||||| ||||||||    
T  5083884 aaatagtggtcacgcaa 5083900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 18312935 - 18312837
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    ||||||||||||||| | |||||||| | ||||||||||| ||||||| || |||||| ||||||||||| |||| || | |||||||||||||||||||    
T  18312935 tgaccactatttttcaagaatttattaggttaactaagtggaaaaatagtggtcacatgcattttagttgcgtgagcaca-ttttcagcttctaaatagt 18312837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 68 - 155
Target Start/End: Complemental strand, 20556857 - 20556770
Alignment:
Q  68 aatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcac 155  Q
    |||||||||| ||||||||||| ||||||| || ||||    |||||||||| ||||||| |||||||||||||||||||||| ||||    
T  20556857 aatttatttggttaactaagtggaaaaatattggtcacgcgtattttagttgcgtgaccacatttttcagcttctaaatagtggtcac 20556770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 155
Target Start/End: Complemental strand, 4290935 - 4290831
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    ||||||||| ||||  | |||||||||| ||||||||||| ||||||| || ||||  ||| || ||||| ||||||| |||||||| ||||||||||||    
T  4290935 tgaccactagtttttcagaatttatttggttaactaagtggaaaaatagtggtcacgcacactt-agttgcgtgaccacatttttcaacttctaaatagt 4290837  T
Q  150 gatcac 155  Q
    | ||||    
T  4290836 ggtcac 4290831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 21548607 - 21548464
Alignment:
Q  4 agttaaccaaatatatagtctgtgtaatcacannnnnnnagttacatgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatc 103  Q
    ||||||| |||||||| |||||||| |||| |       |||| | ||||||||||||||| | |||||||||| ||||||||||| ||||| | || |     
T  21548607 agttaactaaatatatggtctgtgtgatcatatttgtttagttgcgtgaccactatttttccagaatttatttggttaactaagtggaaaaacagtggtt 21548508  T
Q  104 acatacattttagttgtgtgaccatatttttcagcttctaaata 147  Q
    ||   ||||  ||||| ||||||| |||||||||||| ||||||    
T  21548507 acgcgcattcgagttgcgtgaccacatttttcagcttttaaata 21548464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 32964852 - 32964775
Alignment:
Q  69 atttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaat 146  Q
    ||||||| | |||| |||||| ||||||| || |||| | ||||||||||   |||||||||||||||||||||||||    
T  32964852 atttattaggttaattaagtggaaaaatagtggtcacgtgcattttagttacatgaccatatttttcagcttctaaat 32964775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 5174975 - 5174910
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacatttta 115  Q
    ||||||||| ||||  | |||||||||||||||||||||| ||||||| || ||||  ||||||||    
T  5174975 tgaccactaatttttcagaatttatttgattaactaagtgtaaaaatagtggtcacgcacatttta 5174910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 5321962 - 5322071
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    |||||||||||||| || |||||||||| ||||||||||| ||||||| || ||||   ||||||||||| |||| |||||||||||||||||||||| |    
T  5321962 tgaccactatttttttagaatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgatcatatttttcagcttctaaataat 5322061  T
Q  150 gatcacgcaa 159  Q
    ||||||||||    
T  5322062 gatcacgcaa 5322071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 5573888 - 5573780
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    ||||||||||||||| |||||||||||| ||||||||||| ||||||| || |||| | ||||||||||   |||||| |||||||| ||||||||||||    
T  5573888 tgaccactatttttc-aaaatttatttggttaactaagtggaaaaatagtggtcacgtgcattttagttccatgaccacatttttcaacttctaaatagt 5573790  T
Q  150 gatcacgcaa 159  Q
    | ||||||||    
T  5573789 ggtcacgcaa 5573780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 38606828 - 38606937
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    |||||||||| |||| | |||||||||| ||||||||||| ||||||| || |||||  |||||| |||| ||||||| |||||||||||||||||||||    
T  38606828 tgaccactatgtttccagaatttatttggttaactaagtggaaaaatagtggtcacacgcattttcgttgcgtgaccacatttttcagcttctaaatagt 38606927  T
Q  150 gatcacgcaa 159  Q
    | | ||||||    
T  38606928 ggtaacgcaa 38606937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 15714695 - 15714794
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    ||||||||||||||   ||||||||||| ||||||||||| ||||||| || ||||  |||||||||||  |||||||||||||||||||| ||||||||    
T  15714695 tgaccactattttttcgaaatttatttggttaactaagtggaaaaatagtggtcacggacattttagttacgtgaccatatttttcagcttttaaatagt 15714794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 50 - 155
Target Start/End: Original strand, 1240901 - 1241005
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    ||||||||||||||| | |||||||||| |||||||||||  |||||| || ||||  |||||||||||   |||||| |||||||||||||||||||||    
T  1240901 tgaccactatttttccataatttatttggttaactaagtgggaaaatagtggtcacgcacattttagtt-catgaccacatttttcagcttctaaatagt 1240999  T
Q  150 gatcac 155  Q
    | ||||    
T  1241000 ggtcac 1241005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 31273580 - 31273671
Alignment:
Q  68 aatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcacgcaa 159  Q
    |||||||||| |||||| ||||||||||||  | |||| | |||||||| ||  ||||||||||||||||||||||||||| | ||||||||    
T  31273580 aatttatttggttaacttagtgaaaaaatagcgttcacgtgcattttagctgcatgaccatatttttcagcttctaaataggggtcacgcaa 31273671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 29367076 - 29367160
Alignment:
Q  71 ttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcac 155  Q
    ||||||| ||||||||||| ||||||| || ||||   ||||||||||| ||||||| ||||||||||||| |||||||| ||||    
T  29367076 ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttcaaaatagtggtcac 29367160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 32959628 - 32959563
Alignment:
Q  91 aaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcacg 156  Q
    ||||||| || ||||| ||||||||||||||||||||||||||| ||||||| ||| ||| |||||    
T  32959628 aaaaatagtggtcacacacattttagttgtgtgaccatattttttagcttcttaatggtggtcacg 32959563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 31596894 - 31596795
Alignment:
Q  59 tttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcacgca 158  Q
    |||||| | |||||||||| |||| |||||| ||||||| |||| |||  ||||| |||||| |||||| |||||||| ||||||||||||| | |||||    
T  31596894 tttttccataatttatttggttaattaagtggaaaaatagtgattacacgcattt-agttgtctgaccacatttttcatcttctaaatagtggtaacgca 31596796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 1251477 - 1251585
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    ||||||||||||||| | |||||||||| |||||||||||  |||||| || || |  |||||||||||   ||| || ||||||||| || ||||||||    
T  1251477 tgaccactatttttccataatttatttggttaactaagtgggaaaatagtggtcgcgcacattttagtt-catgatcacatttttcaggttttaaatagt 1251575  T
Q  150 gatcacgcaa 159  Q
    | ||||||||    
T  1251576 ggtcacgcaa 1251585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 68 - 149
Target Start/End: Original strand, 26493355 - 26493435
Alignment:
Q  68 aatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    ||||||||||||||||||| || ||||||| |  ||||   || |||||||| ||||||| |||||||||||||||||||||    
T  26493355 aatttatttgattaactaaatggaaaaatagttgtcacgcgca-tttagttgcgtgaccacatttttcagcttctaaatagt 26493435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 24575907 - 24575954
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaata 97  Q
    ||||||||||||||| | |||||||||| |||| ||||||||||||||    
T  24575907 tgaccactatttttccagaatttatttggttaaataagtgaaaaaata 24575954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 26914684 - 26914746
Alignment:
Q  43 agttacatgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcac 105  Q
    |||||| ||||||||||||||| | |||||||||| |||| | |||| |||||||||| ||||    
T  26914684 agttacgtgaccactatttttcaagaatttatttggttaattgagtggaaaaataatggtcac 26914746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 33286263 - 33286217
Alignment:
Q  113 ttagttgtgtgaccatatttttcagcttctaaatagtgatcacgcaa 159  Q
    ||||||| ||||||| ||||||||||||||||| |||| ||||||||    
T  33286263 ttagttgcgtgaccacatttttcagcttctaaaaagtggtcacgcaa 33286217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 43 - 155
Target Start/End: Original strand, 29677078 - 29677190
Alignment:
Q  43 agttacatgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttct 142  Q
    |||| ||||||||||||||||  | |||||||||| ||||||||||| ||||||| || ||||  |||||||||||| ||||||| ||||||||||||||    
T  29677078 agttgcatgaccactattttttcagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtgaccacatttttcagcttct 29677177  T
Q  143 aaatagtgatcac 155  Q
    |||||||| ||||    
T  29677178 aaatagtggtcac 29677190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 34364340 - 34364243
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaata 147  Q
    |||||| |||||||| | ||||| |||| ||||||||||||||||||  || |||| | ||||||||||||||||||| || ||||||||||||||||    
T  34364340 tgaccattatttttccagaatttttttggttaactaagtgaaaaaattgtggtcacgttcattttagttgtgtgaccacatgtttcagcttctaaata 34364243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 38952016 - 38951906
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccata--tttttcagcttctaaata 147  Q
    |||||||||||| || |||||||||||| ||||||||||  ||||||| || ||| |  ||||||||||| ||||| |||  |||||||| |||||||||    
T  38952016 tgaccactatttctccaaaatttatttggttaactaagtagaaaaatagtggtcagacgcattttagttgcgtgactatatttttttcagtttctaaata 38951917  T
Q  148 gtgatcacgca 158  Q
    ||| |||||||    
T  38951916 gtggtcacgca 38951906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 42604323 - 42604227
Alignment:
Q  54 cactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagtg 150  Q
    ||||||||||  | |||||||||  ||||||||||| ||||||| || ||||   |||||||||||| |||||||| |||| |||||||||||||||    
T  42604323 cactattttttcagaatttatttcgttaactaagtggaaaaatagtggtcacgcgcattttagttgtatgaccatacttttaagcttctaaatagtg 42604227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 29167828 - 29167918
Alignment:
Q  68 aatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcacgcaa 159  Q
    |||||||||| ||||||||||| ||||||| || |||    ||||||| ||| |||||||||||||| ||||||||||||||| ||||||||    
T  29167828 aatttatttggttaactaagtggaaaaatagtggtcatgcgcatttta-ttgcgtgaccatattttttagcttctaaatagtggtcacgcaa 29167918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 2570017 - 2569970
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaata 97  Q
    ||||||||||||||||| |||||||||| ||||||||||| |||||||    
T  2570017 tgaccactatttttctagaatttatttggttaactaagtggaaaaata 2569970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 9468199 - 9468120
Alignment:
Q  69 atttatttgattaactaagtga-aaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaata 147  Q
    ||||||||| |||||||||||  ||||||| |  ||||||||||||||||||||||| || ||||| |||||| ||||||    
T  9468199 atttatttggttaactaagtggcaaaaatagtagtcacatacattttagttgtgtgatcacattttacagcttttaaata 9468120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 68 - 159
Target Start/End: Complemental strand, 25238567 - 25238477
Alignment:
Q  68 aatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcacgcaa 159  Q
    |||||||||| ||||||||||| ||||||| || | ||  |||||||| ||  ||||||| |||||| ||||||||||||||| ||||||||    
T  25238567 aatttatttggttaactaagtggaaaaatagtggttacgcacatttta-ttacgtgaccacattttttagcttctaaatagtggtcacgcaa 25238477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 70 - 159
Target Start/End: Original strand, 517433 - 517522
Alignment:
Q  70 tttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcacgcaa 159  Q
    |||||||| |||||||||| |||||||| |  |||  | ||||||||||| |||| ||||||||| | ||||||||||||| | ||||||    
T  517433 tttatttggttaactaagttaaaaaatagtagtcatgttcattttagttgcgtgatcatattttttaacttctaaatagtggttacgcaa 517522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 43 - 159
Target Start/End: Complemental strand, 35922848 - 35922732
Alignment:
Q  43 agttacatgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttct 142  Q
    |||| ||||||||||||||||  | |||||||||| |||||||| || ||||||| || ||| |  ||||||||||| ||||||| ||||||||||||||    
T  35922848 agttgcatgaccactattttttcagaatttatttggttaactaaatggaaaaatagtggtcatacgcattttagttgcgtgaccacatttttcagcttct 35922749  T
Q  143 aaatagtgatcacgcaa 159  Q
    |||||||| ||||||||    
T  35922748 aaatagtggtcacgcaa 35922732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 42034904 - 42034771
Alignment:
Q  11 caaatatatagtctgtgtaatcacannnnnnnagttacatgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacataca 110  Q
    ||||||||| || ||||||||||||       |||| | ||||||||| ||||| |||||||||||| ||||||||||| ||||||| || |||| | ||    
T  42034904 caaatatatggtatgtgtaatcacatttttttagttgcgtgaccactagttttccaaaatttatttggttaactaagtggaaaaatagtggtcacgtgca 42034805  T
Q  111 ttttagttgtgtgaccatatttttcagcttctaa 144  Q
    ||||||||| ||||||| ||||||||||||||||    
T  42034804 ttttagttgcgtgaccacatttttcagcttctaa 42034771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 158
Target Start/End: Original strand, 33958936 - 33959088
Alignment:
Q  6 ttaaccaaatatatagtctgtgtaatcacannnnnnnagttacatgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcac 105  Q
    |||||||||||||| |||| ||||||||||       || | ||||||||| ||||||| | |||||||||| | ||||||||| ||||||| || | ||    
T  33958936 ttaaccaaatatatggtctatgtaatcacatttttttagctgcatgaccacaatttttccagaatttatttggtcaactaagtggaaaaatagtggttac 33959035  T
Q  106 atacattttagttgtgtgaccatatttttcagcttctaaatagtgatcacgca 158  Q
        |||||||||| ||||||||||||||||| |||||||||||| |||||||    
T  33959036 tcggattttagttgcgtgaccatatttttcagtttctaaatagtggtcacgca 33959088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 13312707 - 13312609
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatag 148  Q
    ||||||||||||||| | |||||||||| ||||||||||| ||||||| |   |||   ||||||||||| ||||||| ||||||||||||||||||||    
T  13312707 tgaccactatttttccataatttatttggttaactaagtggaaaaatagttgccacgcgcattttagttgcgtgaccacatttttcagcttctaaatag 13312609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 55 - 159
Target Start/End: Complemental strand, 31189681 - 31189578
Alignment:
Q  55 actatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagtgatca 154  Q
    ||||| |||| | |||||||||||||||| ||||| |||| || || ||||| |||||||||||| |||| || ||||||||||||||||||||| ||||    
T  31189681 actatgtttccagaatttatttgattaaccaagtggaaaa-tagtggtcacaaacattttagttgcgtgatcacatttttcagcttctaaatagtaatca 31189583  T
Q  155 cgcaa 159  Q
     ||||    
T  31189582 tgcaa 31189578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 22169566 - 22169457
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    |||||| |||||||  |||||||||||| ||||||| ||  ||||||| || ||||   ||||||||||| ||||||| |||||||| ||| ||||||||    
T  22169566 tgaccattattttttcaaaatttatttggttaactacgttgaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcaacttataaatagt 22169467  T
Q  150 gatcacgcaa 159  Q
    | ||||||||    
T  22169466 ggtcacgcaa 22169457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 36169394 - 36169442
Alignment:
Q  111 ttttagttgtgtgaccatatttttcagcttctaaatagtgatcacgcaa 159  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  36169394 ttttagttgcgtgaccatatttttcagcttctaaatagtggtcacgcaa 36169442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 19621477 - 19621550
Alignment:
Q  54 cactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgacca 127  Q
    ||||||||||| | |||||||||| ||||||||||| ||||||| || ||||  |||||||||||| |||||||    
T  19621477 cactatttttccagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtgacca 19621550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 38521968 - 38522076
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    |||||| || ||||||| |||||||||  ||||||||||| ||||||| || ||||   ||||||| | | ||||||| |||||||||||||||||||||    
T  38521968 tgaccattagttttctagaatttatttagttaactaagtgtaaaaatagtggtcacgcgcatttta-tcgcgtgaccacatttttcagcttctaaatagt 38522066  T
Q  150 gatcacgcaa 159  Q
    | ||| ||||    
T  38522067 ggtcatgcaa 38522076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 155
Target Start/End: Original strand, 43461701 - 43461806
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    |||| |||||||||  | |||||||||| || |||||||| ||||||| || | || |  |||||||||| |||||| ||||||||| ||||||||||||    
T  43461701 tgacaactattttttcagaatttatttggtttactaagtggaaaaatagtggttacgtgaattttagttgcgtgaccgtatttttcaacttctaaatagt 43461800  T
Q  150 gatcac 155  Q
    | ||||    
T  43461801 ggtcac 43461806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 7156182 - 7156105
Alignment:
Q  69 atttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaat 146  Q
    ||||||||| |||| |||||| |||||||||| ||||  | |||||||||| | || || ||||||||||||||||||    
T  7156182 atttatttggttaattaagtggaaaaataatggtcacgcatattttagttgcgcgatcacatttttcagcttctaaat 7156105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 43262708 - 43262771
Alignment:
Q  72 tatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttc 135  Q
    |||||| ||||||||||| ||||||| || ||||   ||||||||||||||||||| |||||||    
T  43262708 tatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgtgaccacatttttc 43262771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 30704398 - 30704476
Alignment:
Q  69 atttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccata-tttttcagcttctaaat 146  Q
    ||||||||| ||||||||||| ||||||| || ||||   ||||||||||||| ||||| | ||||||||||| |||||    
T  30704398 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 30704476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 33179759 - 33179867
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    ||||||||| |||| || |||||||||||||||||||||| ||||||| || |||||  ||||||||||||||| ||| ||||||||  |||||||||||    
T  33179759 tgaccactacttttttagaatttatttgattaactaagtggaaaaatagtggtcacacgcattttagttgtgtggccacatttttcactttctaaatagt 33179858  T
Q  150 gatcacgca 158  Q
    | |||||||    
T  33179859 ggtcacgca 33179867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 33249616 - 33249725
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    ||||||||| ||||  |||||||||||||||||||| ||| ||||||| || |||||  |||||||  || ||||||| |||||||| ||||||||||||    
T  33249616 tgaccactactttttcaaaatttatttgattaactaggtggaaaaatagtggtcacacgcattttatgtgcgtgaccacatttttcaccttctaaatagt 33249715  T
Q  150 gatcacgcaa 159  Q
    | ||||||||    
T  33249716 ggtcacgcaa 33249725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 1966833 - 1966941
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    ||||||||| ||||| | |||||||||| |||| |||||| ||||||| || ||||   ||||| ||||| ||||||| |||||||||||||||||||||    
T  1966833 tgaccactagttttccagaatttatttggttaattaagtggaaaaatagtggtcacgcgcattt-agttgcgtgaccacatttttcagcttctaaatagt 1966931  T
Q  150 gatcacgcaa 159  Q
    | ||||||||    
T  1966932 ggtcacgcaa 1966941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 16583705 - 16583596
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    |||| |||||||| | | |||||||||| |||| |||||| ||||||| || ||||   |||||||||||  ||| ||||||||||||||||||||||||    
T  16583705 tgactactattttaccataatttatttggttaattaagtggaaaaatagtggtcacgcgcattttagttgcatgatcatatttttcagcttctaaatagt 16583606  T
Q  150 gatcacgcaa 159  Q
    | ||||||||    
T  16583605 ggtcacgcaa 16583596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 17633339 - 17633427
Alignment:
Q  48 catgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttca 136  Q
    ||||||||| |||| || |||||||||||| |||||||||| |||||||| || ||||   ||||||||||| ||||||||||||||||    
T  17633339 catgaccacaatttgtccaaaatttatttggttaactaagttaaaaaatagtggtcacgcgcattttagttgcgtgaccatatttttca 17633427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 55 - 150
Target Start/End: Original strand, 35544425 - 35544519
Alignment:
Q  55 actatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagtg 150  Q
    ||||||| || |||||||||||  |||| |||||| ||||||| ||||||||  ||||| ||||| ||||||| ||||||||||||||||||||||    
T  35544425 actatttatccaaaatttatttagttaattaagtggaaaaatagtgatcacacgcattt-agttgcgtgaccacatttttcagcttctaaatagtg 35544519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 24669274 - 24669197
Alignment:
Q  69 atttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaat 146  Q
    ||||||||| ||||||||||||||||||| || |||||   |||||||||| |||||||||||||| || ||||||||    
T  24669274 atttatttggttaactaagtgaaaaaatagtggtcacacgaattttagttgcgtgaccatatttttgagtttctaaat 24669197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 9809183 - 9809074
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    |||||| | |||||| | || ||||||| |||||||| || ||||||| || ||||   ||||| ||||| ||||| | |||||||||||||||||||||    
T  9809183 tgaccattttttttccataaattatttggttaactaaatggaaaaatagtggtcacgcgcatttgagttgcgtgactacatttttcagcttctaaatagt 9809084  T
Q  150 gatcacgcaa 159  Q
    | ||||||||    
T  9809083 ggtcacgcaa 9809074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 159
Target Start/End: Original strand, 8740796 - 8740899
Alignment:
Q  55 actatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagtgatca 154  Q
    |||| ||||| | |||||||||  ||||||||||  ||||||| || ||||   |||||||||   ||||||| ||||||||||||||||||||||||||    
T  8740796 actacttttccataatttatttagttaactaagtagaaaaatagtggtcacgcgcattttagtac-gtgaccacatttttcagcttctaaatagtgatca 8740894  T
Q  155 cgcaa 159  Q
    |||||    
T  8740895 cgcaa 8740899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 14351171 - 14351071
Alignment:
Q  50 tgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagt 149  Q
    |||||||||||||   |||||||||||| ||||||||||| ||||||| || |||   |||||||||||| |||| || || ||| |||||| |||||||    
T  14351171 tgaccactattttgacaaaatttatttggttaactaagtggaaaaatagtggtcatggacattttagttgcgtgatcacatcttttagcttcaaaatagt 14351072  T
Q  150 g 150  Q
    |    
T  14351071 g 14351071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 55666844 - 55666934
Alignment:
Q  68 aatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcacgcaa 159  Q
    |||||||||| ||||||||||| ||||||| || ||||  |||||||||||  |||||||  ||||||||||| |||||| || ||||||||    
T  55666844 aatttatttgcttaactaagtggaaaaatagtggtcacgaacattttagtt-cgtgaccacgtttttcagcttataaataatggtcacgcaa 55666934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 159
Target Start/End: Complemental strand, 9810848 - 9810760
Alignment:
Q  71 ttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcacgcaa 159  Q
    ||||||| |||||||| || |||||||  | ||||  |||||| ||||| ||||| | |||||| ||||||||||||||| ||||||||    
T  9810848 ttatttggttaactaaatggaaaaatagaggtcacgcacatttgagttgcgtgactacattttttagcttctaaatagtggtcacgcaa 9810760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 20874880 - 20874833
Alignment:
Q  112 tttagttgtgtgaccatatttttcagcttctaaatagtgatcacgcaa 159  Q
    |||||||| || |||| ||||||||||||||||| |||||||||||||    
T  20874880 tttagttgcgttaccacatttttcagcttctaaaaagtgatcacgcaa 20874833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 147
Target Start/End: Complemental strand, 19596832 - 19596794
Alignment:
Q  109 cattttagttgtgtgaccatatttttcagcttctaaata 147  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  19596832 cattttagttgcgtgaccacatttttcagcttctaaata 19596794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 163 - 318
Alignment:
Q  4 agttaaccaaatatatagtctgtgtaatcacannnnnnnagttacatgaccactatttttctaaaatttatttgattaactaagtgaaaaaataatgatc 103  Q
    |||||||||||||||| | |||||| ||||||       |||| | ||||||||| ||||  |||| |||||||  ||| |||||| ||||||| || ||    
T  163 agttaaccaaatatatggactgtgtgatcacattgttttagttgcgtgaccactaatttttcaaaaattatttggataagtaagtggaaaaatagtggtc 262  T
Q  104 acatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcacgcaa 159  Q
    |    ||||||||||| ||||||| |||||||||||||||||||||| ||||||||    
T  263 atgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaa 318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 112235 - 112158
Alignment:
Q  69 atttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaat 146  Q
    ||||||||  ||||||||||| ||||||| || |||| | ||||||| ||| |||||||  |||||||||||||||||    
T  112235 atttatttagttaactaagtggaaaaatagtggtcacgtgcattttaattgcgtgaccacgtttttcagcttctaaat 112158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 10633 - 10724
Alignment:
Q  68 aatttatttgattaactaagtgaaaaaataatgatcacatacattttagttgtgtgaccatatttttcagcttctaaatagtgatcacgcaa 159  Q
    |||||||||| ||||||||||| |||||||||| ||||    |||||||||| ||||||| |||||| |  || ||||||||| ||| ||||    
T  10633 aatttatttggttaactaagtggaaaaataatggtcacgggtattttagttgcgtgaccacattttttattttttaaatagtggtcatgcaa 10724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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