View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_high_14 (Length: 479)
Name: NF7332_high_14
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 252 - 465
Target Start/End: Original strand, 52792637 - 52792850
Alignment:
| Q |
252 |
atttgcgagatgagatcgcaaagcaaatcttgtcgtcgtaaatgactaacctctcttggaaagggatcggttcttggatcagagggtaagtctctaacaa |
351 |
Q |
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| T |
52792637 |
atttgcgagatgagatcgcaaagcaaatcttgtcgtcgtaaatgactaacctctcttggaaagggatcggttcttggatcagagggtaagtctctaacaa |
52792736 |
T |
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| Q |
352 |
aggaattatcccaattcagatcttcaagttcgcgtttcttcttctgaataaggctttgattcttaaattcttgagttacagagtcaagcaacggtgctga |
451 |
Q |
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| T |
52792737 |
aggaattatcccaattcagatcttcaagttcgcgtttcttcttctgaataaggctttgattcttaaattcttgagttacagagtcaagcaacggtgctga |
52792836 |
T |
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| Q |
452 |
caatcccttctctg |
465 |
Q |
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| T |
52792837 |
caatcccttctctg |
52792850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 25 - 213
Target Start/End: Original strand, 52792412 - 52792599
Alignment:
| Q |
25 |
aatatagttagtagattgaaatatgatgatatgaaagtaagtaaattaatgagtaaagaaatgtgagagactaactcgttattatctaagtcaagtagtt |
124 |
Q |
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| T |
52792412 |
aatatagttaatagattgaaatatgatgatatgatagtaagtaaat-aatgagtaaagaaatgtgagaaactaactcgttattatctaagtcaagtagtt |
52792510 |
T |
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| Q |
125 |
cggcaacggattcagaccatacaacgagttgtggatcatctactgcaactgatggtgatacttttgtatagcaagcatgcaatacctgc |
213 |
Q |
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| T |
52792511 |
cggcaacggattcagaccatacaacgagttgtggatcatctactgaaactgatggtgatacttttgtatagcaagcatgcaatacctgc |
52792599 |
T |
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