View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_high_24 (Length: 391)
Name: NF7332_high_24
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 31238686 - 31239065
Alignment:
| Q |
1 |
cttccttatagttttgtttataattttcttagacaagttgcaaagtcggtgctatatatcttgtgtttattcagaatatggttgactttctgtcttttga |
100 |
Q |
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| T |
31238686 |
cttccttatagttttgtttataattttcttagacaagttgcaaagtcggtgctatatatcttgtgtttattcagaatatggttgactttctgtcttttga |
31238785 |
T |
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| Q |
101 |
ttaaattataaagtaataaagtaataataatttaaagttggtgaatgagtcaaagaagtaagaagaaaatctaagagaaagtcacaggtgaacatgaagt |
200 |
Q |
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| T |
31238786 |
ttaaattataaagtaataaagtaataataatttaaagttggtgaatgagtcaaagaagtaagaagaaaatctaagagaaagtcacaggtgaacatgaagt |
31238885 |
T |
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| Q |
201 |
gtgaaaggaggagacnnnnnnnggaggaggttagtgatgatagaatatattattaaccactaacttaaggactctaattacaatgaattgggacaatccc |
300 |
Q |
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| T |
31238886 |
gtgaaaggaggagacaaaaaaaggaggaggttagtgatgatagaatatattattaaccactaacttaaggactctaattacaatgaattgggacaatccc |
31238985 |
T |
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| Q |
301 |
catccatagtttgagagcagtacaagttatcaagatagctaaaatccccctgagaattcatatagtactttcagagaata |
380 |
Q |
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| T |
31238986 |
catccatagtttgagagcagtacaagttatcaagatagctaaaatccccctgagaattcatatagtactttcagagaata |
31239065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 135 - 279
Target Start/End: Original strand, 31249236 - 31249379
Alignment:
| Q |
135 |
aagttggtgaatgagtcaaagaagtaagaagaaaatctaagagaaagtcacaggtgaacatgaagtgtgaaaggaggagacnnnnnnnggaggaggttag |
234 |
Q |
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| T |
31249236 |
aagttagtgaatgagtcaaagaagtaagaagaaaatctaagagaaagtgacaggtgaacatgaagtgtgaaaggaggagac-aaaaagggaggaggttag |
31249334 |
T |
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| Q |
235 |
tgatgatagaatatattattaaccactaacttaaggactctaatt |
279 |
Q |
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| T |
31249335 |
tgatgatagaatatattatttaccactaacttaaggactataatt |
31249379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 31249154 - 31249232
Alignment:
| Q |
25 |
tttcttagacaagttgcaaagtcggtgctatatatcttgtgtttattcagaatatggttgactttctgtcttttgatta |
103 |
Q |
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||||||| ||||||||| || || || |||||||||| || | || ||||||||||||||||||| ||| ||||||||| |
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| T |
31249154 |
tttcttacacaagttgctaattcagtactatatatctcgtctctaatcagaatatggttgactttttgtgttttgatta |
31249232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 343
Target Start/End: Complemental strand, 32588738 - 32588680
Alignment:
| Q |
285 |
gaattgggacaatccccatccatagtttgagagcagtacaagttatcaagatagctaaa |
343 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||| ||| |||||||||||| |
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| T |
32588738 |
gaattgggacaatccccatccatagattgagagcactacaagatattaagatagctaaa |
32588680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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