View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7332_high_26 (Length: 345)
Name: NF7332_high_26
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_high_26 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 30574601 - 30574288
Alignment:
| Q |
19 |
gtgagaacaaaattttatctcaattattgagacgatactaactggtgtttgatatattggcaaacgtgaagatagctagaatcatctttgttaaaataca |
118 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30574601 |
gtgagaacaaaatttgatctcaattattaagacgatactaactggtgtttgatatattggcaaacgtgaagatagctagaatcatctttgttaaaataca |
30574502 |
T |
|
| Q |
119 |
gtgtaatgctatatttgagattttagatggacaaccataacatttgcataagttattatgctaaagtttcacatgcatcaagatgttccttatagaaaaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30574501 |
gtgtaatgctatatttgagattttagatggacacccataacatttgcataagttattatgctaaagtttcacatgcatcaagatgttccttatagaaaaa |
30574402 |
T |
|
| Q |
219 |
tctgtcaatgtctgctgctatattttaaagcaaaagaccatattacaagtctgctgcttttctatttccaacgacagtctgctacagcctacagccactt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30574401 |
tctgtcaatgtctgctgctatattttaaagcaaaaaaccatattacaagtctgctgcttttctatttccaaggacagtctgctacagcctacagccactt |
30574302 |
T |
|
| Q |
319 |
tgattcactgatct |
332 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30574301 |
tgattcactgatct |
30574288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 105 - 259
Target Start/End: Complemental strand, 30570610 - 30570457
Alignment:
| Q |
105 |
tttgttaaaatacagtgtaatgctatatttgagattttagatggacaaccataacatttgcataagttattatgctaaagtttcacatgcatcaagatgt |
204 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30570610 |
tttgttaaaatacaatgtaatgctatatttgagattttagatggacaaccataacatttgcatcagttattatgctaaagtttcacatgcatc-agatgt |
30570512 |
T |
|
| Q |
205 |
tccttatagaaaaatctgtcaatgtctgctgctatattttaaagcaaaagaccat |
259 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30570511 |
tccttgtagaaaaatctgtcaatgtctgctgctacattttaaagcaaaagaccat |
30570457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University