View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7332_high_29 (Length: 338)

Name: NF7332_high_29
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7332_high_29
NF7332_high_29
[»] chr6 (6 HSPs)
chr6 (15-320)||(11018976-11019281)
chr6 (19-185)||(11050227-11050393)
chr6 (56-306)||(11002609-11002859)
chr6 (125-306)||(11079750-11079931)
chr6 (95-300)||(10968435-10968640)
chr6 (95-300)||(10982385-10982590)
[»] chr2 (1 HSPs)
chr2 (151-232)||(24462263-24462344)
[»] chr8 (1 HSPs)
chr8 (150-182)||(23628117-23628149)


Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 11019281 - 11018976
Alignment:
Q  15 ctgtgccactcacaaacctattttctgattggttcacttttaaagccaccttcatttcatcgactaaaaccaatctatttagcctttgttctgcgaacaa 114  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11019281 ctgtgccactcacaaacctattttctgattggttcactttcaaagccaccttcatttcatcgactaaaaccaatctatttagcctttgttctgcgaacaa 11019182  T
Q  115 aggccatgcaatcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccacccacggagttatgactcaatatc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11019181 aggccatgcaatcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccacccacggagttatgactcaatatc 11019082  T
Q  215 gcaacttgtggggcccagtttctcacaaccattcccttgtcctttgtcctcttcaaaaacccttctggcaataactcatccaaactcagttcgtctgagt 314  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||  | ||||||||    
T  11019081 gcaacttgtggggcccaatttctcacaaccattcccttgtcctttgtcctctccaaaaacccttctggaaataactcgtccaaactcaacttgtctgagt 11018982  T
Q  315 ctggtt 320  Q
    ||||||    
T  11018981 ctggtt 11018976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 11050393 - 11050227
Alignment:
Q  19 gccactcacaaacctattttctgattggttcacttttaaagccaccttcatttcatcgactaaaaccaatctatttagcctttgttctgcgaacaaaggc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11050393 gccactcacaaacctattttctgattggttcacttttaaagccaccttcatttcatcgactaaaaccaatctatttagcctttgttctgcaaacaaaggc 11050294  T
Q  119 catgcaatcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaa 185  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  11050293 catgcaatcattggcaccccttcataaatagcttccaacacggagttccatccacaatgaatcacaa 11050227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 56 - 306
Target Start/End: Complemental strand, 11002859 - 11002609
Alignment:
Q  56 aaagccaccttcatttcatcgactaaaaccaatctatttagcctttgttctgcgaacaaaggccatgcaatcattggcaccccttcacaaatagcttcca 155  Q
    ||||||||||||||||| || || |||| || | | || | ||||||||||||  ||||||||||||||||||| ||||| |||||||||||||||||||    
T  11002859 aaagccaccttcatttcctcaaccaaaatcattttgttcaacctttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatagcttcca 11002760  T
Q  156 acacggagttccatccacaatgagtcacaaatccacccacggagttatgactcaatatcgcaacttgtggggcccagtttctcacaaccattcccttgtc 255  Q
    |||| |||||||||||||| |||||||| |||||||| || || |  ||||||||||| ||| ||||||| ||||| |||||||| ||||||||||| ||    
T  11002759 acactgagttccatccacagtgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtggtgcccaatttctcaccaccattcccttttc 11002660  T
Q  256 ctttgtcctcttcaaaaacccttctggcaataactcatccaaactcagttc 306  Q
    ||| ||||||| |||||||||||||||||| || ||||||||||| |||||    
T  11002659 cttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttc 11002609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 125 - 306
Target Start/End: Complemental strand, 11079931 - 11079750
Alignment:
Q  125 atcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccacccacggagttatgactcaatatcgcaacttgtg 224  Q
    |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| || ||| |||| || | ||| | | ||||||    
T  11079931 atcattggaactccttcgcaaatagcttccaacacggagttccatccacaatgagtcacgaacccaccaactgagctatgtcttagtattgaaccttgtg 11079832  T
Q  225 gggcccagtttctcacaaccattcccttgtcctttgtcctcttcaaaaacccttctggcaataactcatccaaactcagttc 306  Q
    | ||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||| |||||    
T  11079831 gtgcccagtttctaacaaccattcccttctcctttgtcctctccaaaaacccttctggcaacaactcatccaaacttagttc 11079750  T

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Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 95 - 300
Target Start/End: Complemental strand, 10968640 - 10968435
Alignment:
Q  95 agcctttgttctgcgaacaaaggccatgcaatcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccaccca 194  Q
    ||||||||||||||  | || ||||| || | ||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |    
T  10968640 agcctttgttctgcatataatggccacgccaccataggcactccttcacaaatagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaa 10968541  T
Q  195 cggagttatgactcaatatcgcaacttgtggggcccagtttctcacaaccattcccttgtcctttgtcctcttcaaaaacccttctggcaataactcatc 294  Q
      |||| |||  | ||||| ||| ||||||| ||||| |||||  | ||||||||||| | ||||||||||| |||||||||||| || |  ||||| ||    
T  10968540 tcgagtcatgctttaatattgcaccttgtggtgcccaatttcttgccaccattcccttttgctttgtcctctccaaaaacccttcaggaagcaactcgtc 10968441  T
Q  295 caaact 300  Q
    ||||||    
T  10968440 caaact 10968435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 95 - 300
Target Start/End: Complemental strand, 10982590 - 10982385
Alignment:
Q  95 agcctttgttctgcgaacaaaggccatgcaatcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccaccca 194  Q
    ||||||||||||||  |||| |||||||| | ||| ||||| |||||||| | |||||||||||| ||||||||||||||||| ||||| |||||||| |    
T  10982590 agcctttgttctgcatacaatggccatgccaccataggcactccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccga 10982491  T
Q  195 cggagttatgactcaatatcgcaacttgtggggcccagtttctcacaaccattcccttgtcctttgtcctcttcaaaaacccttctggcaataactcatc 294  Q
      |||| |||  | ||||| ||| ||||||| ||||| ||||| || ||||||||| | || |||||||||| |||||||||||| || |  ||||| ||    
T  10982490 tcgagtcatgctttaatattgcaccttgtggtgcccaatttcttaccaccattcccctttcttttgtcctctccaaaaacccttcagggagcaactcgtc 10982391  T
Q  295 caaact 300  Q
    ||||||    
T  10982390 caaact 10982385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 24462263 - 24462344
Alignment:
Q  151 ttccaacacggagttccatccacaatgagtcacaaatccacccacggagttatgactcaatatcgcaacttgtggggcccag 232  Q
    ||||||||| |||||||||||||||||||||| |||| |||| || |   |||| |||||||||   |||||||||||||||    
T  24462263 ttccaacactgagttccatccacaatgagtcaaaaatgcaccaacagctctatgtctcaatatcatcacttgtggggcccag 24462344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 23628117 - 23628149
Alignment:
Q  150 cttccaacacggagttccatccacaatgagtca 182  Q
    |||||||||| ||||||||||||||||||||||    
T  23628117 cttccaacaccgagttccatccacaatgagtca 23628149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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