View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_high_35 (Length: 306)
Name: NF7332_high_35
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_high_35 |
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| [»] scaffold0136 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 265
Target Start/End: Original strand, 18268006 - 18268266
Alignment:
| Q |
2 |
tcttatcaacacgtgaaccatatgcttccatgcaactcaccatagttacagt----tctgcattactctttgatgaattggaggtaatttatcttaatta |
97 |
Q |
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| T |
18268006 |
tcttatcaacacgtgaaccatatgcttccatgcaactcaccatagttacactcttttccgcattactctttgatgaattggaggtaatttatctttatta |
18268105 |
T |
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| Q |
98 |
aagaaaaatctgttttcttcctttttattcagttaccattttcatccccttaatttaacatgtaatttttatataatttgtttcataatcgaatcctact |
197 |
Q |
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| T |
18268106 |
aagaaaaatatgttttctttctttttattcggttaccattttcatcctcttaatttaacatgtaattttcatataacttgtttcataatcgaatcc---- |
18268201 |
T |
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| Q |
198 |
catcattagggggtaaattattactaatctttttcatctcaagaacatcaaatcaaactcctcctcct |
265 |
Q |
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| T |
18268202 |
---cattagggggtaaattatcattaatttttttcatctcaagaacatcaaatcaaactcctcctcct |
18268266 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 2562961 - 2563035
Alignment:
| Q |
130 |
ttaccattttcatccccttaatttaacatgtaatttttatataatttgtttcataatcgaatcctactcatcatt |
204 |
Q |
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| T |
2562961 |
ttaccattttcatctctttcattcaacatgtgatctctatatcatttgtttcagaatcgaatcatacttatcatt |
2563035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0136 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 88
Target Start/End: Original strand, 36900 - 36928
Alignment:
| Q |
60 |
ttactctttgatgaattggaggtaattta |
88 |
Q |
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| T |
36900 |
ttactctttgatgaattggaggtaattta |
36928 |
T |
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