View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7332_high_4 (Length: 693)

Name: NF7332_high_4
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7332_high_4
NF7332_high_4
[»] chr4 (1 HSPs)
chr4 (2-658)||(40126756-40127419)


Alignment Details
Target: chr4 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 2 - 658
Target Start/End: Complemental strand, 40127419 - 40126756
Alignment:
Q  2 gagtttggtgttaaaaagctctaccaccgggcacagtcataccgaacggaggctccaccagatgatgtacgcagccggtgactacgagagttgtcatgcc 101  Q
    |||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40127419 gagtgtggtgttaaaaagctccaccaccgggcacagtcatactgaacggaggctccaccagatgatgtacgcagccagtgactacgagagttgtcatgcc 40127320  T
Q  102 tgccacggggataatgacagtgagcacaaaaggcagtatgatgggacccatgtttcggtagatagataccaggggagagattactgggtggtgaatgtga 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40127319 tgccacggggataatgacagtgagcacaaaaggcagtatgatgggacccatgtttcggtggatagataccaggggagagattactgggtggtgaatgtga 40127220  T
Q  202 gaagccaagatcgtcctaagttactgtttgatattgtgtgcatgctcacggacatgcaatatgaggtgtttcatgcggctgttacctcgaacagcccaat 301  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  40127219 gaagccgagatcgtcctaagttactgtttgatattgtgtgcatgctcacggacatgcaatatgaggtgtttcatgcggctgttacctcgaacagccccat 40127120  T
Q  302 ggcagaacaggtacaccggatttttcaattaattatttgc-aggccaaaaggtatataggtgcaattatttatgtggtg----nnnnnnnncctctgttt 396  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||             ||||||||    
T  40127119 ggcagaacaggtacaccggatttttcaattaattatctgcaaggccaaaaggtatataggtgcaattatttatgtggtgtttttttttttctctctgttt 40127020  T
Q  397 tctaatcacaattcaattaatgtgtggccataaacatgaatagactgttaaacaaaatgataaggttatcgtatt--nnnnnnngaagaagaatggtaac 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||          ||||| || ||||||    
T  40127019 tctaatcacaattcaattaatgtgtggccataaacatgaatagactgttaaacaaaatgataaggttatcttattaaaaaaaaaaaagaaaaacggtaac 40126920  T
Q  495 catgttattggtgcgaagtaatccaccaatattttcgatgactaatctctgcagaggaatctgacccggtcttctttagtcctcccctcccaaccatatt 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40126919 catgttattggtgcgaagtaatccaccaatattttcgatgactaatctctgcagaggaatctgacccggtcttctttagtcctcccctcccaaccatatt 40126820  T
Q  595 taaattaggctttggtagatgatgacattatattaacaaaattattttaaaattgaatttaacc 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40126819 taaattaggctttggtagatgatgacattatattaacaaaattattttaaaattgaatttaacc 40126756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University