View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7332_high_40 (Length: 273)
Name: NF7332_high_40
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_high_40 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 27808213 - 27807972
Alignment:
| Q |
19 |
ttcatgtcataatcaatctgctatgcttctctagcttctcatccttcattcttgtttgtaatattccaagacttttgacattggagaactggtaccaagt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27808213 |
ttcatgtcataatcaatctgctatgcttct--agcttcttatccttcattcttgtttgtaatattccaagacttttgacattggagaactggtaccaagt |
27808116 |
T |
|
| Q |
119 |
agttgacattttcacaaagcattgcatattgaagattgtatgtatatgtacacatgtatatatcaatttggatcaatcaatgctaacaattattttctcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27808115 |
agttgacattttcacaaagcattgcatattgaagattgtatgtatatgtacacatgtatatatcaatttggatcaatcaatgctaacaattattttctcc |
27808016 |
T |
|
| Q |
219 |
tcgatttgtttctgtttcacggttactttttgtcatgtcttctt |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27808015 |
tcgatttgtttctgtttcacggttactttttgtcatgtcttctt |
27807972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University