View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_high_5 (Length: 665)
Name: NF7332_high_5
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 313 - 649
Target Start/End: Complemental strand, 36167208 - 36166872
Alignment:
| Q |
313 |
gtataatgtagcctttttcatacgcattaatgttagttttatccaacatatagagctcggatagtggatagttgaatgtttttctccatcaataattatt |
412 |
Q |
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| T |
36167208 |
gtataatgtagcctttttcatacgcattaatgttagttttatccaacatatagagctcggatagtggatagttgaatgtttttctccatcaataattatt |
36167109 |
T |
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| Q |
413 |
ctctctgtctcaactctcaaattacaagttgtttcacttatccaaatgatttctctatggttcgaatatcatactatggcgacattaggttctatcttta |
512 |
Q |
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| T |
36167108 |
ctctctgtctcaactctcaaattacaagttgtttcacttatccaaatgatttctctatggttcgaatatcatgctatggcgaaattaggttctatcttta |
36167009 |
T |
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| Q |
513 |
tagctatttgttgggagttttggaggaatagaagtgatgaggttttttagaatgttggtccattatgggaggggattactcgctttaggttcttcctagg |
612 |
Q |
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| T |
36167008 |
tagctatttgttgggagttttggaggaatagaagtgatgaggttttttagaatgttggtccattatgggaggggattactcgctttaggttcttcctagg |
36166909 |
T |
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| Q |
613 |
gatgtcttggaccattgctcttaggcgttgaaggaag |
649 |
Q |
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| T |
36166908 |
gatgtcttgggccattgctcttaggtgttgaaggaag |
36166872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 6 - 253
Target Start/End: Complemental strand, 36167596 - 36167366
Alignment:
| Q |
6 |
ctcaagctctcaaaatatctttcttttttgtggtgaatctctcaaaatatctgtccataccggttgcatgtcactaaaatatataaaaataatcgtttca |
105 |
Q |
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| T |
36167596 |
ctcaatctctcaaaatatctttcttttttgtggtgaatctctcaaaatatctgtccataccggttgcatgtcactaaaatatataaaaataatcgtttca |
36167497 |
T |
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| Q |
106 |
ttttcctttttnnnnnnntttcggaaataaacgtgttatatttaaattagttacatatagactttcaaatcccgtgatgagaaattcaaaacatggcaga |
205 |
Q |
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| T |
36167496 |
ttttccttttt-----------------aaacgtgttatatttaaattagttaaatatagactttcaaatcccgtgatgagaaattcaaaacatggcaga |
36167414 |
T |
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| Q |
206 |
tggcacacatcatcattcctctctagaatagtcattgccccatatcat |
253 |
Q |
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| T |
36167413 |
tggcacacatcatcattcctctctagaatagtcattgccccatatcat |
36167366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 36167340 - 36167274
Alignment:
| Q |
274 |
tattgatgcaggcattagtttacgtgcaggtatccaaatgtataatgtagcctttttcatacgcatt |
340 |
Q |
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| T |
36167340 |
tattgatgcaggcattagtttacgtgcaggtatccaaatgtataatgtagcctttttcatacgcatt |
36167274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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