View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7332_high_56 (Length: 240)

Name: NF7332_high_56
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7332_high_56
NF7332_high_56
[»] chr3 (10 HSPs)
chr3 (143-222)||(45731407-45731486)
chr3 (143-209)||(4172995-4173061)
chr3 (143-221)||(30694575-30694652)
chr3 (143-221)||(4179322-4179400)
chr3 (143-221)||(46589790-46589868)
chr3 (80-135)||(4172896-4172951)
chr3 (80-135)||(4179223-4179278)
chr3 (80-135)||(46589913-46589968)
chr3 (80-134)||(45731531-45731585)
chr3 (80-135)||(30694696-30694751)
[»] chr2 (4 HSPs)
chr2 (143-221)||(35917749-35917826)
chr2 (36-135)||(35917869-35917963)
chr2 (156-211)||(18557401-18557456)
chr2 (80-135)||(9795551-9795606)
[»] chr8 (6 HSPs)
chr8 (143-217)||(40147361-40147433)
chr8 (153-221)||(12619936-12620005)
chr8 (143-221)||(11325540-11325618)
chr8 (143-221)||(14139526-14139604)
chr8 (80-135)||(40147477-40147532)
chr8 (1-62)||(40147612-40147673)
[»] chr1 (3 HSPs)
chr1 (152-220)||(7713805-7713873)
chr1 (80-135)||(27024319-27024374)
chr1 (161-221)||(27024197-27024257)
[»] chr7 (3 HSPs)
chr7 (143-202)||(48260839-48260898)
chr7 (146-199)||(42694673-42694726)
chr7 (80-135)||(48260740-48260795)
[»] scaffold0740 (1 HSPs)
scaffold0740 (161-221)||(2649-2709)
[»] chr6 (3 HSPs)
chr6 (80-134)||(19403296-19403350)
chr6 (143-204)||(19403395-19403455)
chr6 (82-131)||(15107762-15107811)
[»] scaffold0105 (2 HSPs)
scaffold0105 (161-201)||(18577-18617)
scaffold0105 (80-132)||(18686-18738)
[»] chr4 (4 HSPs)
chr4 (161-201)||(8192002-8192042)
chr4 (80-135)||(54421024-54421079)
chr4 (155-214)||(54421106-54421164)
chr4 (80-132)||(8192111-8192163)
[»] scaffold0057 (1 HSPs)
scaffold0057 (143-204)||(60742-60802)
[»] chr5 (1 HSPs)
chr5 (80-135)||(11140975-11141030)


Alignment Details
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 45731486 - 45731407
Alignment:
Q  143 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataact 222  Q
    ||||||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||    
T  45731486 ttgtttctcctatattatattatttgaagttatttattctgactttttatttacaaaaatcactacaccagattataact 45731407  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 4172995 - 4173061
Alignment:
Q  143 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatcattaca 209  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||| |||||||| ||||||| ||||    
T  4172995 ttgtttctcatatattatattacttgaagttgtttattctgacttgttatttgcgaaaatcactaca 4173061  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 30694652 - 30694575
Alignment:
Q  143 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataac 221  Q
    ||||||||| ||||||| || |||||||||| |||||||||||||||||||||||||||||| |||| |||| ||||||    
T  30694652 ttgtttctcttatattatat-acttgaagttgtttattctgactttttatttgcaaaaatcactacagtagactataac 30694575  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 4179322 - 4179400
Alignment:
Q  143 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataac 221  Q
    |||||||||  |||||| ||||||||||||| | |||||| ||||||||||||||||||||| |||| |||| ||||||    
T  4179322 ttgtttctccaatattatattacttgaagttgtatattctaactttttatttgcaaaaatcactacagtagactataac 4179400  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 46589868 - 46589790
Alignment:
Q  143 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataac 221  Q
    ||||||||| ||||||| ||||||||||  | |||||||||||||||||||||||||||||| || | |||| ||||||    
T  46589868 ttgtttctcttatattatattacttgaaactgtttattctgactttttatttgcaaaaatcactatagtagactataac 46589790  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 4172896 - 4172951
Alignment:
Q  80 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 135  Q
    |||||||||| || ||||||||||| |||||||||| |||||||||||||||||||    
T  4172896 attaaagttgtatctttaaaattgtagataatttgactgattcagatgataatttt 4172951  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 4179223 - 4179278
Alignment:
Q  80 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 135  Q
    |||||||||| || ||||||||||| |||||||||| |||| ||||||||||||||    
T  4179223 attaaagttgtatctttaaaattgtagataatttgactgatccagatgataatttt 4179278  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 46589968 - 46589913
Alignment:
Q  80 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 135  Q
    ||||||||||||| ||||||||||| |||||||||| ||||  |||||||||||||    
T  46589968 attaaagttgcatctttaaaattgtagataatttgactgatctagatgataatttt 46589913  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 45731585 - 45731531
Alignment:
Q  80 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataattt 134  Q
    ||||||||||||| ||||||||||| |||||||||| | ||||| ||||||||||    
T  45731585 attaaagttgcatctttaaaattgttgataatttgactaattcaaatgataattt 45731531  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 30694751 - 30694696
Alignment:
Q  80 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 135  Q
    ||||||||||||| ||||||||||  |||||||||| ||||  |||||||||||||    
T  30694751 attaaagttgcatctttaaaattggagataatttgattgatctagatgataatttt 30694696  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 35917826 - 35917749
Alignment:
Q  143 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataac 221  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| ||| |||||||||||||    
T  35917826 ttgtttctcatatattatattacttgaagttatttattctgattttttatttgcagaaatcgtta-actagattataac 35917749  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 35917963 - 35917869
Alignment:
Q  36 ggatcagttccttggtgtatgcttactaagtgtttcagatgataattaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 135  Q
    ||||||||| ||||||||||||||||||||||||    ||| || |||||||||||||||||||||| | |||||||| ||||||||| |||||||||||    
T  35917963 ggatcagtttcttggtgtatgcttactaagtgtt----atggta-ttaaagttgcatttttaaaattattgataatttaaatgattcaaatgataatttt 35917869  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 18557401 - 18557456
Alignment:
Q  156 attacattacttgaagttatttattctgactttttatttgcaaaaatcattacact 211  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||| | ||||||    
T  18557401 attatattacttgaagctatttattctgattttttatttgcaaaaataactacact 18557456  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 9795551 - 9795606
Alignment:
Q  80 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 135  Q
    ||||||||||||| ||||||||||| |||||||||| | ||  |||||||||||||    
T  9795551 attaaagttgcatctttaaaattgtagataatttgactaatctagatgataatttt 9795606  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 40147433 - 40147361
Alignment:
Q  143 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactagatta 217  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  40147433 ttgtttctcatatattatatta-ttgaagttatttattctgactttttatttgcaaaaatcgtta-actagatta 40147361  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 12619936 - 12620005
Alignment:
Q  153 tatattacattacttgaagttattt-attctgactttttatttgcaaaaatcattacactagattataac 221  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  12619936 tatattatattactttaagttattttattctgactttttatttgcaaaaatcatttcactagattataac 12620005  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 11325540 - 11325618
Alignment:
Q  143 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataac 221  Q
    ||||||||  || |||| ||||||||||||||| ||||||||| | |||||||||||||||| ||||||||||||||||    
T  11325540 ttgtttctgctacattatattacttgaagttatctattctgacatgttatttgcaaaaatcactacactagattataac 11325618  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 14139526 - 14139604
Alignment:
Q  143 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataac 221  Q
    ||||||||| ||||||  |||| ||||||||||||||| || ||||||||||||||||| || ||||||||||||||||    
T  14139526 ttgtttctcctatattgtattatttgaagttatttattatgcctttttatttgcaaaaagcactacactagattataac 14139604  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 40147532 - 40147477
Alignment:
Q  80 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 135  Q
    ||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||    
T  40147532 attaaagttgcatttttaaaattgttgataatttaaatgattcaggtgataatttt 40147477  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 40147673 - 40147612
Alignment:
Q  1 tttcatttttatagatttaattgccctttcgtttgggatcagttccttggtgtatgcttact 62  Q
    |||||||||||||||||| |  |||||| || || ||||||||| ||||||||||| |||||    
T  40147673 tttcatttttatagattttacagcccttacggttaggatcagtttcttggtgtatgtttact 40147612  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 7713805 - 7713873
Alignment:
Q  152 atatattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataa 220  Q
    |||||||| | |||||| ||||||||| ||||||||||||||||||||||||| |||||| ||||||||    
T  7713805 atatattatactacttgcagttatttaatctgactttttatttgcaaaaatcactacacttgattataa 7713873  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 27024374 - 27024319
Alignment:
Q  80 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 135  Q
    ||||||||| ||| ||||||||||| |||||||||| |||| | ||||||||||||    
T  27024374 attaaagtttcatctttaaaattgtagataatttgactgatcctgatgataatttt 27024319  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 27024257 - 27024197
Alignment:
Q  161 attacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataac 221  Q
    |||| |||||||| |||||||||||||||||||| ||||| ||  |||| |||| ||||||    
T  27024257 attatttgaagttgtttattctgactttttattttcaaaattcgctacagtagactataac 27024197  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 48260839 - 48260898
Alignment:
Q  143 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaat 202  Q
    ||||||||| ||||||| | ||||||||||| ||||||||||||||||||||||||||||    
T  48260839 ttgtttctcctatattatactacttgaagttgtttattctgactttttatttgcaaaaat 48260898  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 42694726 - 42694673
Alignment:
Q  146 tttctcatatattacattacttgaagttatttattctgactttttatttgcaaa 199  Q
    |||||| ||||||| |||||||||| ||||||||| ||||||||||||||||||    
T  42694726 tttctcctatattatattacttgaaattatttattttgactttttatttgcaaa 42694673  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 48260740 - 48260795
Alignment:
Q  80 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 135  Q
    |||||||||| || ||||||||||| |||||||||| |||| | ||||||||||||    
T  48260740 attaaagttgtatctttaaaattgtagataatttgactgatccggatgataatttt 48260795  T

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Target: scaffold0740 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0740
Description:

Target: scaffold0740; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 2709 - 2649
Alignment:
Q  161 attacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataac 221  Q
    |||||||||||||||||||||||||||||||||| | ||||||| |||  |||||||||||    
T  2709 attacttgaagttatttattctgactttttatttacgaaaatcactacggtagattataac 2649  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 19403296 - 19403350
Alignment:
Q  80 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataattt 134  Q
    ||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||    
T  19403296 attaaagttgcatctttaaaattgtagataatttgactgattcagatggtaattt 19403350  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 19403395 - 19403455
Alignment:
Q  143 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatca 204  Q
    ||||||||| ||||||| ||||| ||||||| ||| |||||||||||||||| |||||||||    
T  19403395 ttgtttctcctatattatattacatgaagtt-tttgttctgactttttatttacaaaaatca 19403455  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 15107811 - 15107762
Alignment:
Q  82 taaagttgcatttttaaaattgtcgataatttgaatgattcagatgataa 131  Q
    ||||||||||| ||||||||||| |||||||||| ||||  |||||||||    
T  15107811 taaagttgcatctttaaaattgtagataatttgactgatctagatgataa 15107762  T

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Target: scaffold0105 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 18617 - 18577
Alignment:
Q  161 attacttgaagttatttattctgactttttatttgcaaaaa 201  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  18617 attacttgaagttatttattcttactttttatttgcaaaaa 18577  T

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Target: scaffold0105; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 18738 - 18686
Alignment:
Q  80 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataat 132  Q
    ||||||||||||| ||||||||||| |||||||| | |||| |||||||||||    
T  18738 attaaagttgcatctttaaaattgttgataatttaactgatccagatgataat 18686  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 8192042 - 8192002
Alignment:
Q  161 attacttgaagttatttattctgactttttatttgcaaaaa 201  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  8192042 attacttgaagttatttattcttactttttatttgcaaaaa 8192002  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 54421024 - 54421079
Alignment:
Q  80 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 135  Q
    ||||||||||||| ||||||||||| || |||| || |||||||||||||||||||    
T  54421024 attaaagttgcatctttaaaattgtagacaattcgactgattcagatgataatttt 54421079  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 54421106 - 54421164
Alignment:
Q  155 tattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactaga 214  Q
    ||||| ||||| ||||||| ||| ||||||||||||||||||||||||||||||| ||||    
T  54421106 tattatattacatgaagtt-tttgttctgactttttatttgcaaaaatcattacattaga 54421164  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 8192163 - 8192111
Alignment:
Q  80 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataat 132  Q
    ||||||||||||| ||||||||||| |||||||| | |||| |||||||||||    
T  8192163 attaaagttgcatctttaaaattgttgataatttaactgatccagatgataat 8192111  T

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Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 60742 - 60802
Alignment:
Q  143 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatca 204  Q
    ||||||||| ||||||| ||||| ||||||| ||| |||| |||||||||||||||||||||    
T  60742 ttgtttctcctatattatattacatgaagtt-tttgttcttactttttatttgcaaaaatca 60802  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 11140975 - 11141030
Alignment:
Q  80 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 135  Q
    ||||||||||||| ||||||||||| |||||||| | |||| || |||||||||||    
T  11140975 attaaagttgcatctttaaaattgtagataattttactgatccaaatgataatttt 11141030  T

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