View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_high_57 (Length: 238)
Name: NF7332_high_57
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_high_57 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 45476576 - 45476364
Alignment:
| Q |
1 |
tgtgtcatttcatattttcatataattattatttcatatagtgccaaaatgaaaagggccatggtggagtcaaatggtaagtacagaccagaaaattcct |
100 |
Q |
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| T |
45476576 |
tgtgtcatttcatattttcatataattattatttcata-agtgccaaaatgaaaagggccatggtggagtcaaatggaaagtacaga---------tcct |
45476487 |
T |
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| Q |
101 |
gaggaataatattgtattgtaataatttaacatttttaggggttgttgaaacttgaaacgtggccgactggcggttaagagtcaaatgaaagattggatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45476486 |
gaggaataatattgtattgtaataatttaacatttttaggggttgttgaaacttgaaacgtggccgactggcggttaagagtcaaatgaaagattggatg |
45476387 |
T |
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| Q |
201 |
aatcagtcggtcaggtggtaaac |
223 |
Q |
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|||||||| |||||||||||||| |
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| T |
45476386 |
aatcagtcagtcaggtggtaaac |
45476364 |
T |
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