View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_high_60 (Length: 229)
Name: NF7332_high_60
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_high_60 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 41833119 - 41833322
Alignment:
| Q |
8 |
aatattagatttcttgctatatacatttataagcaagcacatagattttattttttgtaatattcttacaagagaaaacaaattgtggatggaaagatta |
107 |
Q |
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| T |
41833119 |
aatattagatttcttgcgatatacatatataagcaagcatagagattttattttttgtaatattcttacaagacaaaataaattttggatggaaagatta |
41833218 |
T |
|
| Q |
108 |
tataacaagccgttaataatcatccatgcacgtacaagaatcaaacactcatcaaaggaatttgaaaaaccaacaaaaaacgacaaattgcacaaccata |
207 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
41833219 |
tataacgagccgttaataaccatccatgcacgtacaagaatcaaacactcatcaaaggaattaaaaaaaccaacaaaaaacgacaaatagcacaaccata |
41833318 |
T |
|
| Q |
208 |
catt |
211 |
Q |
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|||| |
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| T |
41833319 |
catt |
41833322 |
T |
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