View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_high_61 (Length: 223)
Name: NF7332_high_61
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_high_61 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 23 - 209
Target Start/End: Complemental strand, 3848579 - 3848395
Alignment:
| Q |
23 |
atattaaaataggtcacaataatgtgtacatgcatacatacataccgtgtttgactattcaatgattcgcttaaatttcattttgtttttcaatcatttt |
122 |
Q |
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| T |
3848579 |
atattaaaataggtcacaataatgtgtacatacatacatacataccgtgtttgactattcaatgattcgcttaaatttcattttgtttttcaatca--tt |
3848482 |
T |
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| Q |
123 |
aaaccaaacaaagcatattgaaagagcagacactacctaagtagaaacagaagttgcaacttgtaactaagatttggacacacaaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3848481 |
aaaccaaacaaagcatattgaaagagcagacactacctaagtagaaacagaagttgcaacttttaactaagatttggacacacaaaa |
3848395 |
T |
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