View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7332_high_62 (Length: 215)

Name: NF7332_high_62
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7332_high_62
NF7332_high_62
[»] chr8 (1 HSPs)
chr8 (19-182)||(21538084-21538248)
[»] chr7 (1 HSPs)
chr7 (19-173)||(13332658-13332813)
[»] chr4 (2 HSPs)
chr4 (101-179)||(2306748-2306827)
chr4 (19-77)||(2306666-2306724)
[»] chr1 (3 HSPs)
chr1 (128-184)||(35840678-35840734)
chr1 (104-184)||(41570406-41570487)
chr1 (19-80)||(35840792-35840853)
[»] chr6 (1 HSPs)
chr6 (31-77)||(4087960-4088006)


Alignment Details
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 21538248 - 21538084
Alignment:
Q  19 aactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgctacnnnnnnnnnnnnnnnnnnnnatattaaaataatgtttg 118  Q
    ||||||||| |||| |||||||||||||| |||||  |||||||||||||||||||||||||                    ||||||||||||| ||||    
T  21538248 aactgaatccacggaaaatacgaattacaatatacgctggcgtgtattccaccaaatgctactttttttgttttttatttttatattaaaataatatttg 21538149  T
Q  119 tgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaatagcattgctg 182  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21538148 tgaaaatcactttagtacaattcgtggttttcgtttattttcattcgtggttaatagcattgctg 21538084  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 13332813 - 13332658
Alignment:
Q  19 aactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgctacnnnnnnnnnnnnnnnnnnnnatattaaaataatgtttg 118  Q
    ||||||||| |||| |||||||||||||| ||||| ||||| ||||||||||||||||||||                    ||||||||||||||||||    
T  13332813 aactgaatccacggaaaatacgaattacactatacgatggcttgtattccaccaaatgctactttttttgttttttatttttatattaaaataatgtttg 13332714  T
Q  119 tgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaata 173  Q
    ||||||||| |||||||||||| |||||||| ||||||||| ||||||||||||||    
T  13332713 tgaaaatcactttagtacaatttgtggttttcgtttattttaattcgtggttaata 13332658  T

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Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 2306748 - 2306827
Alignment:
Q  101 atattaaaataatgtttgtgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaatagcattg 179  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| |||| ||||| |||||||||||| |||||||||||    
T  2306748 atattaaaataatgtttgtgaaaatcactttagtagaattcgtgattttcgtttactttcattcgtggataatagcattg 2306827  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 2306666 - 2306724
Alignment:
Q  19 aactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgc 77  Q
    ||||||||| |||| |||||||||||||| ||||| || ||||||||||||||||||||    
T  2306666 aactgaatccacggaaaatacgaattacactatacgatagcgtgtattccaccaaatgc 2306724  T

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Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 35840734 - 35840678
Alignment:
Q  128 tttagtacaattcgtggttttggtttattttcattcgtggttaatagcattgctgat 184  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  35840734 tttagtacaattcatggttttcgtttattttcattcgtggttaatagcattgctgat 35840678  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 41570487 - 41570406
Alignment:
Q  104 ttaaaataatgtttgtgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaatagcattgctgat 184  Q
    |||||||||||||||||||||||| ||||| ||| || || ||||| |||| |||  ||||||||| |||||||||||||||    
T  41570487 ttaaaataatgtttgtgaaaatcactttagcacagtttgtcgttttcgtttgtttctattcgtggtgaatagcattgctgat 41570406  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 35840853 - 35840792
Alignment:
Q  19 aactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgctac 80  Q
    ||||||||| |||| |||||||||||| | ||||| ||||| ||||||||||| ||||||||    
T  35840853 aactgaatccacggaaaatacgaattatactatacgatggcatgtattccaccgaatgctac 35840792  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 4087960 - 4088006
Alignment:
Q  31 gggaaatacgaattacattataccatggcgtgtattccaccaaatgc 77  Q
    |||||||||||||||||  |||| |||||||||||||||||||||||    
T  4087960 gggaaatacgaattacacaatacgatggcgtgtattccaccaaatgc 4088006  T

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