View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7332_high_7 (Length: 619)
Name: NF7332_high_7
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 593; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Original strand, 27895932 - 27896532
Alignment:
| Q |
1 |
atgcagtgtatagggcaaagacccaccggtaccgtctattaagtggctacgtataacctagagttcagaaatatcgtgtcctcgttcagcataaatagcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27895932 |
atgcagtgtatagggcaaagacccaccggtaccgtctattaagtggctacgtataacctagagttcagaaatatcgtgtcctcgttcagcataaatagcc |
27896031 |
T |
|
| Q |
101 |
aaacctgcacataaaattatatcccaatctcaattaataatttagatactaccttgttctctaataattaactaataattgtttcaatattcaaaatgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27896032 |
aaacctgcacataaaattatatcccaatctcaattaataatttagatactaccttgttctctaataattaactaataattgtttcaatattcaaaatgct |
27896131 |
T |
|
| Q |
201 |
tgattcatttgttgggaaggtacaaaagagtttatcagtctttgtaccaagaaagcatgcattgagctacataaatgaagatcatgccacaaccacaagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27896132 |
tgattcatttgttgggaaggtacaaaagagtttatcagtctttgtaccaagaaagcatgcattgagctacataaatgaagatcatgccacaaccacaagt |
27896231 |
T |
|
| Q |
301 |
gatcttgctgatgatgttacgaaaggttactttgctgttcttgcaaagaagggtgtagaaactagaaggtttattgttgggttagattacctaactgatc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27896232 |
gatcttgctgatgatgttacgaaaggttactttgctgttcttgcaaagaagggtgtagaaactagaaggtttattgttgggttagattacttaactgatc |
27896331 |
T |
|
| Q |
401 |
ctgcttttttgggattgcttgatgatgcttgggaggagtatggttttagacagaagggaactcttgttgttccgtgtcggccgatcgacttgcagaacat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27896332 |
ctgcttttttgggattgcttgatgatgcttgggaggagtatggttttagacagaagggaactcttgttgttccgtgtcggccgatcgacttgcagaacat |
27896431 |
T |
|
| Q |
501 |
tctagatagtcggaaaacatagagaagatacaacacgtaaattatgatgttggaaaggatcaaatcctagagtcaaaattatgaaaatttgagagcttta |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27896432 |
tctagatagtcggaaaacatagagaagatacaacacgtaaattaagatgttggaaaggatcaaatcctagagtcaaaattatgaaaatttgagagcttta |
27896531 |
T |
|
| Q |
601 |
t |
601 |
Q |
| |
|
| |
|
|
| T |
27896532 |
t |
27896532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 185 - 503
Target Start/End: Original strand, 27918223 - 27918544
Alignment:
| Q |
185 |
caatattcaaaatgcttgattcatttgttgggaaggtacaaaagagtttatcagtctttgtaccaagaaagcatgcattgagctacataaatgaagatca |
284 |
Q |
| |
|
|||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
27918223 |
caatattcaagatgcttagttcatttgttgagaaggtacaaaagagtttatcagtctttgtaccaagaaagcatgcattgagctactggagtgaagatca |
27918322 |
T |
|
| Q |
285 |
tgccacaaccacaagt---gatcttgctgatgatgttacgaaaggttactttgctgttcttgcaaagaagggtgtagaaactagaaggtttattgttggg |
381 |
Q |
| |
|
||||||||||||| || || |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
27918323 |
tgccacaaccacaggtcacgagcttgctgatgatgttatgaaaggttactttgctgttcttgcaaagaagggtttagaaactagaagatttattgttggg |
27918422 |
T |
|
| Q |
382 |
ttagattacctaactgatcctgcttttttgggattgcttgatgatgcttgggaggagtatggttttagacagaagggaactcttgttgttccgtgtcggc |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| | |
|
|
| T |
27918423 |
ttagattacctaactgatcctgcttttttgggattgcttgatgatgcttgggaggagtatggcttcagacagaaggggactcttgttgttccgtgtcgac |
27918522 |
T |
|
| Q |
482 |
cgatcgacttgcagaacattct |
503 |
Q |
| |
|
| ||||| || |||| |||||| |
|
|
| T |
27918523 |
caatcgatttacagatcattct |
27918544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 156 - 562
Target Start/End: Original strand, 27929757 - 27930159
Alignment:
| Q |
156 |
gttctctaataattaactaataattgtttcaatattcaaaatgcttgattcatttgttgggaaggtacaaaagagtttatcagtctttgtaccaagaaag |
255 |
Q |
| |
|
|||||||||| | | |||| ||| | ||||||||||||| |||||| ||| |||||||| || | ||||||||||||||||||||||||||| |||||| |
|
|
| T |
27929757 |
gttctctaattaatcactattaactctttcaatattcaagatgcttagttcttttgttggtaaagcacaaaagagtttatcagtctttgtacccagaaag |
27929856 |
T |
|
| Q |
256 |
catgcattgagctacataaatgaagatcatgccacaaccacaagtgatcttgctgatgatgttacgaaaggttactttgctgttcttgcaaagaagggtg |
355 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| || |||| |||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27929857 |
catgcattgagctactggaatgaagatcatgccacaac------tggggttgccgatgatgtcatgaaaggttactttgctgttcttgcaaagaagggtg |
27929950 |
T |
|
| Q |
356 |
tagaaactagaaggtttattgttgggttagattacctaactgatcctgcttttttgggattgcttgatgatgcttgggaggagtatggttttagacagaa |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27929951 |
aagaaactagaaggtttattgttgggttagattacttaactgatcctgcttttttgggattgcttgatgatgcttgggaggagtatggttttagacagaa |
27930050 |
T |
|
| Q |
456 |
gggaactcttgttgttccgtgtcggccgatcgacttgcagaacattctagatagtcggaaaacatagagaagata--caacacgtaaattatgatgttgg |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || ||||| ||| ||||| ||||||||| ||||||||| || ||||||| |||||| |||| | |
|
|
| T |
27930051 |
gggaactcttgttgttccgtgtcggccgatagaattacagaatattttagatggtcggaaaatatagagaagctacccaacacgaaaattaagatgaatg |
27930150 |
T |
|
| Q |
554 |
aaaggatca |
562 |
Q |
| |
|
||||||||| |
|
|
| T |
27930151 |
aaaggatca |
27930159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 182 - 535
Target Start/End: Original strand, 27923408 - 27923755
Alignment:
| Q |
182 |
tttcaatattcaaaatgcttgattcatttgttgggaaggtacaaaagagtttatcagtctttgtaccaagaaagcatgcattgagctacataaatgaaga |
281 |
Q |
| |
|
||||| ||||||| |||||| ||| |||||||| || |||||||||||||||||| |||||||||| ||||||||||||||||||||| | |||||| |
|
|
| T |
27923408 |
tttcagtattcaagatgcttagttcttttgttggtaaagtacaaaagagtttatcactctttgtaccgagaaagcatgcattgagctactggagtgaaga |
27923507 |
T |
|
| Q |
282 |
tcatgccacaaccacaagtgatcttgctgatgatgttacgaaaggttactttgctgttcttgcaaagaagggtgtagaaactagaaggtttattgttggg |
381 |
Q |
| |
|
|||||||||| | || |||| |||||||| | |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
27923508 |
tcatgccacagc------tggggttgccgatgatgtcatgaaaggttactttgctgttcttgcaaggaagggtgaggaaactagaaggtttattgttgga |
27923601 |
T |
|
| Q |
382 |
ttagattacctaactgatcctgcttttttgggattgcttgatgatgcttgggaggagtatggttttagacagaagggaactcttgttgttccgtgtcggc |
481 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||| || ||||||||||||||||||||||| ||| ||| |
|
|
| T |
27923602 |
ttagattacttaactgatcctgcttttttgggattgcttgatgatgcttcggaggaatatggtttcaggcagaagggaactcttgttgttccatgtaggc |
27923701 |
T |
|
| Q |
482 |
cgatcgacttgcagaacattctagatagtcggaaaacatagagaagatacaaca |
535 |
Q |
| |
|
|||| || || ||||||||| ||||| |||||||||||||| ||||| |||||| |
|
|
| T |
27923702 |
cgatagaattacagaacattttagatggtcggaaaacatagggaagacacaaca |
27923755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 27918129 - 27918220
Alignment:
| Q |
69 |
aaatatcgtgtcctcgttcagcataaatagccaaac-ctgcacataaaattatatcccaatctcaattaataatttagatactaccttgttc |
159 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| |||| ||||||| |||| ||||||| |||||||||| | ||||||| |||||| |
|
|
| T |
27918129 |
aaatatcgtgttctcgctcagcataaatagccaaactctgctaataaaatcatattccaatcttgattaataattcaaatactacattgttc |
27918220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 27918020 - 27918080
Alignment:
| Q |
19 |
agacccaccggtaccgtctattaagtggctacgtataacctagagttcagaaatatcgtgt |
79 |
Q |
| |
|
||||||||| ||||||| |||||| |||||| || |||||||||||| ||||||||||||| |
|
|
| T |
27918020 |
agacccacctgtaccgtatattaactggctatgtgtaacctagagttaagaaatatcgtgt |
27918080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 466
Target Start/End: Original strand, 27940141 - 27940241
Alignment:
| Q |
366 |
aaggtttattgttgggttagattacctaactgatcctgcttttttgggattgcttgatgatgcttgggaggagtatggttttagacagaagggaactctt |
465 |
Q |
| |
|
||||||||| |||||||||| || | | ||||||||| ||||||||||| |||||| | ||| |||| |||||||||||||||||| | |||| |||| |
|
|
| T |
27940141 |
aaggtttatgattgggttagagtatttgagtgatcctgcatttttgggattacttgatcaagctagggaagagtatggttttagacagcaaggaattctt |
27940240 |
T |
|
| Q |
466 |
g |
466 |
Q |
| |
|
| |
|
|
| T |
27940241 |
g |
27940241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 455
Target Start/End: Original strand, 27956177 - 27956319
Alignment:
| Q |
313 |
gatgttacgaaaggttactttgctgttcttgcaaagaagggtgtagaaactagaaggtttattgttgggttagattacctaactgatcctgcttttttgg |
412 |
Q |
| |
|
||||||| | |||| |||||||||||| |||||| ||||| || |||||||| ||||||||| |||| ||||| ||| | | |||||||| || |||| |
|
|
| T |
27956177 |
gatgttagggaaggatactttgctgttgttgcaatgaaggatggagaaactaaaaggtttatcattggtttagaatacttgagtgatcctgaattcttgg |
27956276 |
T |
|
| Q |
413 |
gattgcttgatgatgcttgggaggagtatggttttagacagaa |
455 |
Q |
| |
|
|| | || ||| | ||| ||| ||||||||||||| |||||| |
|
|
| T |
27956277 |
gactactagatcaagctcaggaagagtatggttttatacagaa |
27956319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University