View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7332_high_9 (Length: 572)

Name: NF7332_high_9
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7332_high_9
NF7332_high_9
[»] chr4 (10 HSPs)
chr4 (34-558)||(18676586-18677107)
chr4 (34-558)||(18652498-18653025)
chr4 (34-558)||(18686626-18687156)
chr4 (34-558)||(18721097-18721621)
chr4 (34-558)||(18696432-18696950)
chr4 (34-558)||(18728522-18729043)
chr4 (252-558)||(18726235-18726542)
chr4 (252-419)||(18682003-18682170)
chr4 (462-558)||(18682168-18682266)
chr4 (75-138)||(18700966-18701029)
[»] chr6 (68 HSPs)
chr6 (79-430)||(27662399-27662746)
chr6 (93-369)||(26638252-26638526)
chr6 (93-369)||(26744218-26744492)
chr6 (275-551)||(26886777-26887052)
chr6 (96-370)||(26625981-26626248)
chr6 (96-370)||(26731958-26732225)
chr6 (78-430)||(26851299-26851662)
chr6 (101-372)||(25491198-25491457)
chr6 (305-430)||(26649265-26649390)
chr6 (305-430)||(26755233-26755358)
chr6 (308-558)||(27674826-27675076)
chr6 (297-430)||(26805290-26805425)
chr6 (80-372)||(28795256-28795522)
chr6 (93-366)||(26952471-26952724)
chr6 (280-430)||(27601946-27602097)
chr6 (304-556)||(31287239-31287491)
chr6 (275-505)||(26961825-26962059)
chr6 (93-376)||(27590170-27590446)
chr6 (465-556)||(27608529-27608620)
chr6 (80-178)||(28789400-28789498)
chr6 (283-430)||(25582496-25582641)
chr6 (283-430)||(26058708-26058853)
chr6 (283-430)||(26078678-26078823)
chr6 (80-556)||(26658645-26659107)
chr6 (80-556)||(26764616-26765078)
chr6 (283-369)||(25513725-25513809)
chr6 (283-369)||(25547830-25547914)
chr6 (283-369)||(26145847-26145931)
chr6 (465-556)||(27681620-27681711)
chr6 (316-375)||(27681801-27681860)
chr6 (297-377)||(27695830-27695912)
chr6 (84-260)||(26876518-26876688)
chr6 (316-429)||(27608380-27608493)
chr6 (105-260)||(27657793-27657943)
chr6 (79-247)||(27715527-27715689)
chr6 (79-244)||(27695597-27695759)
chr6 (79-247)||(26805493-26805655)
chr6 (465-553)||(27715909-27715997)
chr6 (283-369)||(25485840-25485924)
chr6 (316-429)||(27715760-27715873)
chr6 (305-372)||(28789232-28789296)
chr6 (152-251)||(26808430-26808523)
chr6 (90-178)||(26826915-26827003)
chr6 (463-506)||(27602130-27602173)
chr6 (79-178)||(27674585-27674684)
chr6 (465-556)||(27696000-27696091)
chr6 (308-370)||(27657993-27658055)
chr6 (465-558)||(26805162-26805255)
chr6 (100-232)||(26962084-26962210)
chr6 (305-430)||(26980198-26980323)
chr6 (463-556)||(28795072-28795165)
chr6 (321-369)||(25076743-25076791)
chr6 (465-505)||(26649190-26649230)
chr6 (465-505)||(26755158-26755198)
chr6 (465-505)||(26851224-26851264)
chr6 (465-505)||(26952332-26952372)
chr6 (465-505)||(26980123-26980163)
chr6 (468-503)||(25076609-25076644)
chr6 (465-556)||(25485653-25485744)
chr6 (124-179)||(25486397-25486452)
chr6 (463-505)||(26638116-26638158)
chr6 (463-505)||(26744082-26744124)
chr6 (466-504)||(27662782-27662820)
chr6 (152-260)||(25080263-25080365)
chr6 (463-500)||(26625851-26625888)
chr6 (463-500)||(26731828-26731865)
chr6 (124-180)||(26058945-26059001)
chr6 (124-180)||(26078915-26078971)
[»] chr1 (5 HSPs)
chr1 (81-431)||(265354-265706)
chr1 (180-376)||(28124753-28124944)
chr1 (180-376)||(28129784-28129975)
chr1 (93-179)||(26139021-26139107)
chr1 (461-503)||(26138716-26138758)
[»] scaffold0277 (2 HSPs)
scaffold0277 (80-556)||(1735-2188)
scaffold0277 (80-372)||(10701-10967)
[»] chr8 (5 HSPs)
chr8 (321-377)||(22024118-22024174)
chr8 (463-522)||(22023973-22024032)
chr8 (316-371)||(29271099-29271154)
chr8 (468-556)||(29271251-29271339)
chr8 (79-178)||(29270863-29270962)
[»] scaffold0419 (2 HSPs)
scaffold0419 (104-178)||(10550-10624)
scaffold0419 (321-372)||(10382-10433)
[»] scaffold0349 (3 HSPs)
scaffold0349 (79-247)||(16256-16418)
scaffold0349 (465-553)||(15948-16036)
scaffold0349 (316-429)||(16072-16185)
[»] chr2 (3 HSPs)
chr2 (87-178)||(17990171-17990262)
chr2 (323-372)||(17990414-17990463)
chr2 (463-552)||(17990554-17990643)


Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 34 - 558
Target Start/End: Original strand, 18676586 - 18677107
Alignment:
Q  34 tcataaccattgacaaacaaatgaaatctgaaattatatcgaacatccggaagaataataatagaagttatagaagggatctttttacagaaccagaaag 133  Q
    |||||||||||||||||||||| |||||||||||  |   |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18676586 tcataaccattgacaaacaaattaaatctgaaatgtt---gaacatccggaagaataataatagaagttatagaagggatctttttacggaaccagaaag 18676682  T
Q  134 aaattgatccacccctgctttgatgctcgaaccaatctggaatcctaatcacctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaa 233  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18676683 aaattgattgacccctgctttgatgctcgaaccaatctggaatcctaatctcctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaa 18676782  T
Q  234 ttgctgttagtttagcataagatatatattacacattgttgattatatatgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctg 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18676783 ttgctgttagtttagcataagatatatattacacattgttgattatatgtgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctg 18676882  T
Q  334 actcaacaacattcttctacttgaggaactcaatgatttacatttgaatgcttcaagatatttgagattcggtggaaaccctctaatttcctcaagatgc 433  Q
    |||||| |||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18676883 actcaataacattcttctacttgaggaactcaatgatttacatcttaatgcttcaaaatatttgagattcggtggaaaccctctaatttcctcaagatgc 18676982  T
Q  434 tcgttgtaattcaataggagggtcctcataaggtgacattcattaaggcactcgggaagaattttgaaattgccataggataagtctagtcgtttcacat 533  Q
    |||||| ||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   ||||||||    
T  18676983 tcgttggaattcaatccgagggtcctcatacggtgacattcattaaggcactcgggaagaattttgaaattgccaaaggataagtctagaaatttcacat 18677082  T
Q  534 taacacacgacttgagaactatttg 558  Q
    |||||||| ||||||||||||||||    
T  18677083 taacacacaacttgagaactatttg 18677107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 34 - 558
Target Start/End: Original strand, 18652498 - 18653025
Alignment:
Q  34 tcataaccattgacaaacaaatgaaatctgaaat---tatatcgaacatccggaagaataataatagaagttatagaagggatctttttacagaaccaga 130  Q
    ||||||||||||||||| |||| ||||||||||    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18652498 tcataaccattgacaaaaaaattaaatctgaaagaaatatattgaacatccggaagaataataatagaagttatagaagggatctttttacggaaccaga 18652597  T
Q  131 aagaaattgatccacccctgctttgatgctcgaaccaatctggaatcctaatcacctctgttccgtttgggaaacaaatattggtgcacccagcctcatg 230  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18652598 aagaaattgattgacccctgctttgatgctcgaaccaatctggaatcctaatcccctctgttccgtttgggaaacaaatattggtgcacccagcctcatg 18652697  T
Q  231 taattgctgttagtttagcataagatatatattacacattgttgattatatatgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaac 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18652698 taattgctgttagtttagcataagatatatattacacattgttgattatatgtgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaac 18652797  T
Q  331 ctgactcaacaacattcttctacttgaggaactcaatgatttacatttgaatgcttcaagatatttgagattcggtggaaaccctctaatttcctcaaga 430  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  18652798 ctgactcaataacattcttctacttgaggaactcaatgatttacataataatgcttcaaaatatttgagattcggtggaaaccctctaatttcctctaga 18652897  T
Q  431 tgctcgttgtaattcaataggagggtcctcataaggtgacattcattaaggcactcgggaagaattttgaaattgccataggataagtctagtcgtttca 530  Q
    || |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |  |||||||  |||   |||||    
T  18652898 tggtcgttgaaattcaatacgagggtcctcataaggtgacattcattaaggtactcgggaagaattttgaaattgcaacgggataagcttagaaatttca 18652997  T
Q  531 cattaacacacgacttgagaactatttg 558  Q
    ||||||||||||||||||||||||||||    
T  18652998 cattaacacacgacttgagaactatttg 18653025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 34 - 558
Target Start/End: Original strand, 18686626 - 18687156
Alignment:
Q  34 tcataaccattgacaaacaaatgaaatctgaaattatatcgaacatccggaagaataataatagaagttatagaagggatctttttacagaaccagaaag 133  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18686626 tcataaccattgacaaacaaattaaatctgaaattatattgaacatccggaagaataattatagaagttatagaagggatctttttacagaaccagaaag 18686725  T
Q  134 aaattgatccacccctgctttgatgctcgaaccaatctggaatccta------atcacctctgttccgtttgggaaacaaatattggtgcacccagcctc 227  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||      ||| |||||||||||||||||||| |||    |||||||||||||||    
T  18686726 aaattgattgacccctgctttgatgctcgaaccaatctggaatcctattcctaatcccctctgttccgtttgggaaataaaatgaggtgcacccagcctc 18686825  T
Q  228 atgtaattgctgttagtttagcataagatatatattacacattgttgattatatatgaaatactacatatcaaatactattgcaagaaaaaacaacaaca 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18686826 atgtaattgctgttagtttagcataagatatatattacacattgttgattatatgtgaaatactacatatcaaatactattgcaagaaaaaacaacaaca 18686925  T
Q  328 aacctgactcaacaacattcttctacttgaggaactcaatgatttacatttgaatgcttcaagatatttgagattcggtggaaaccctctaatttcctca 427  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |   |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  18686926 aacctgactcaataacattcttctacttgaggaactcaatgatttacaatcatatgcatcaagatatttgagattcggtggaatccctctaatttcctca 18687025  T
Q  428 agatgctcgttgtaattcaataggagggtcctcataaggtgacattcattaaggcactcgggaagaattttgaaattgccataggataagtctagtcgtt 527  Q
    ||||||  |||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||   ||    
T  18687026 agatgcgtgttgaaatccaataggagggtcctcagaaggtgacattcactaaggcactcgggaagaattttgaaattgccaaaggataagtttagaaatt 18687125  T
Q  528 tcacattaacacacgacttgagaactatttg 558  Q
    ||||||||||||||||||| |||||||||||    
T  18687126 tcacattaacacacgacttaagaactatttg 18687156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 34 - 558
Target Start/End: Original strand, 18721097 - 18721621
Alignment:
Q  34 tcataaccattgacaaacaaatgaaatctgaaattatatcgaacatccggaagaataataatagaagttatagaagggatctttttacagaaccagaaag 133  Q
    |||||||||||||||||||||| || | ||  |  | ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18721097 tcataaccattgacaaacaaattaactttgtgaacaaatccaacatccggaagaataataataaaagttatagaagggatctttttacagaaccagaaag 18721196  T
Q  134 aaattgatccacccctgctttgatgctcgaaccaatctggaatcctaatcacctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaa 233  Q
    |||||||   |||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||| |||   ||||||||||||||||||||||    
T  18721197 aaattgaatgacccctgctttggtgctcgaaccaatctggaatcctaatcctctctgttccgtttgggaaagaaagtgtggtgcacccagcctcatgtaa 18721296  T
Q  234 ttgctgttagtttagcataagatatatattacacattgttgattatatatgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctg 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18721297 ttgctgttagtttagcataagatatatattacacattgttgattatatgtgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctg 18721396  T
Q  334 actcaacaacattcttctacttgaggaactcaatgatttacatttgaatgcttcaagatatttgagattcggtggaaaccctctaatttcctcaagatgc 433  Q
    |||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18721397 actcaataacattcttctacttgaggaactcaatgatttacattctaatgcttcaagatatttgagattcggtggaaaccctctaatttcctcaagatgc 18721496  T
Q  434 tcgttgtaattcaataggagggtcctcataaggtgacattcattaaggcactcgggaagaattttgaaattgccataggataagtctagtcgtttcacat 533  Q
    | | |  ||||||||| |||||||  ||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||   ||||||||    
T  18721497 ttgcttaaattcaatatgagggtctccataaggtgacattcattaaggcactcaggaagaattttgaaatagccaaaggataagtctagaaatttcacat 18721596  T
Q  534 taacacacgacttgagaactatttg 558  Q
    |||||||||||||||||||||||||    
T  18721597 taacacacgacttgagaactatttg 18721621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 34 - 558
Target Start/End: Original strand, 18696432 - 18696950
Alignment:
Q  34 tcataaccattgacaaacaaatgaaatctgaaattatatcgaacatccggaagaataataatagaagttatagaagggatctttttacagaaccagaaag 133  Q
    |||||||||||||||||||||| ||||  |||| |||||| |||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||    
T  18696432 tcataaccattgacaaacaaattaaattcgaaactatatccaacatccggaagaataataataaaatttatagaagggatctttttacggaaccagaaag 18696531  T
Q  134 aaattgatccacccctgctttgatgctcgaaccaatctggaatcctaatcacctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaa 233  Q
    ||||||||  |||||||||||||||||||||||||||||||||||      |||||||||||||||||||| |||  |||||||||||||||||||||||    
T  18696532 aaattgattgacccctgctttgatgctcgaaccaatctggaatcc------cctctgttccgtttgggaaagaaaatttggtgcacccagcctcatgtaa 18696625  T
Q  234 ttgctgttagtttagcataagatatatattacacattgttgattatatatgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctg 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18696626 ttgctgttagtttagcataagatatatattacacattgttgattatatgtgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctg 18696725  T
Q  334 actcaacaacattcttctacttgaggaactcaatgatttacatttgaatgcttcaagatatttgagattcggtggaaaccctctaatttcctcaagatgc 433  Q
    |||||| ||||||||||||||||||||||||||||||||||||    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18696726 actcaataacattcttctacttgaggaactcaatgatttacatcgatatgcatcaagatatttgagattcggtggaagccctctaatttcctcaagatgc 18696825  T
Q  434 tcgttgtaattcaataggagggtcctcataaggtgacattcattaaggcactcgggaagaattttgaaattgccataggataagtctagtcgtttcacat 533  Q
      |||| ||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||  |||||||| |||   ||||||||    
T  18696826 ctgttgaaatccaataggagggtcctcagaaggtgacattcactaaggcactcgggaagaattttgaatttgccaagggataagtttagatatttcacat 18696925  T
Q  534 taacacacgacttgagaactatttg 558  Q
    |||||||||||||||||||||||||    
T  18696926 taacacacgacttgagaactatttg 18696950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 34 - 558
Target Start/End: Original strand, 18728522 - 18729043
Alignment:
Q  34 tcataaccattgacaaacaaatgaaatctgaaattatatcgaacatccggaagaataataatagaagttatagaagggatctttttacagaaccagaaag 133  Q
    |||| ||| ||||||||||||| |||||  |||| ||||  ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18728522 tcatgacctttgacaaacaaattaaatcctaaataatattcaacattcggaagaataataataaaagttatagaagggatctttttacagaaccagaaag 18728621  T
Q  134 aaattgatccacccctgctttgatgctcgaaccaatctggaatcctaatcacctctgttccgtttgggaaa-caaatattggtgcacccagcctcatgta 232  Q
    |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||    
T  18728622 aaattgaatgacccctgctttgatgctcgaaccaatctggaatcctaatcacctctgttccgtttgggaaaacaaatgt-ggtgcacccagcctcatgta 18728720  T
Q  233 attgctgttagtttagcataagatatatattacacattgttgattatatatgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacct 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||   ||||||||    
T  18728721 attgctgttagtttagcataagatatatattacacattgttgattatatgtgaaatactacttatcaaatactattgcaagaaaaaaca---acaaacct 18728817  T
Q  333 gactcaacaacattcttctacttgaggaactcaatgatttacatttgaatgcttcaagatatttgagattcggtggaaaccctctaatttcctcaagatg 432  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||  ||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  18728818 gactcaataacattcttctagttgaggaactcaatgatttacattcaaatgcatcaagacatttgagattcggtggaaaccctctaatttcctcaagatg 18728917  T
Q  433 ctcgttgtaattcaataggagggtcctcataaggtgacattcattaaggcactcgggaagaattttgaaattgccataggataagtctagtcgtttcaca 532  Q
    || |||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |  ||| ||| |||||||||   |||||||    
T  18728918 ctggttggaattcaataggagggtcctcataaggtgacattcactaaggcactcaggaagaattttgaactgaccaaaggttaagtctagaaatttcaca 18729017  T
Q  533 ttaacacacgacttgagaactatttg 558  Q
    |||| |||| ||||||||||||||||    
T  18729018 ttaatacaccacttgagaactatttg 18729043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 252 - 558
Target Start/End: Original strand, 18726235 - 18726542
Alignment:
Q  252 aagatatatattacacattgttgattatatatgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttct 351  Q
    ||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  18726235 aagatatatattacacattgtcgattatatgtgaaatactacacatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaaaat-cttct 18726333  T
Q  352 acttgaggaactcaatgatttacatttgaatgcttcaagatatttgagattcggtggaaaccctctaatttcctcaagatgctcgttgtaattcaatagg 451  Q
    | |||||||||||||||||||||||   |||||   |||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  18726334 atttgaggaactcaatgatttacatcctaatgcacgaagacatttgagattcggtggaaaccctctaatttcctcaagatgctcgttaaaattcaatagg 18726433  T
Q  452 agggtcctcataaggtgacattcattaaggcactcgggaagaattttgaaattgccataggataagtctagtcgtttcacatta--acacacgacttgag 549  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||   ||||||||||  |||||| |||||||    
T  18726434 agggtcctcataaggtgacattcactaaggcactcgggaagaattttgaaattgccaaaggataagtctagaaatttcacattaacacacacaacttgag 18726533  T
Q  550 aactatttg 558  Q
    |||||||||    
T  18726534 aactatttg 18726542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 252 - 419
Target Start/End: Original strand, 18682003 - 18682170
Alignment:
Q  252 aagatatatattacacattgttgattatatatgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttct 351  Q
    |||||||||||||| |||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18682003 aagatatatattacgcattgtcgattatatgtgaaatactacacatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttct 18682102  T
Q  352 acttgaggaactcaatgatttacatttgaatgcttcaagatatttgagattcggtggaaaccctctaa 419  Q
    | ||||| |||||||||||||||||   |||||   |||| |||||||||||||||||||||||||||    
T  18682103 atttgagcaactcaatgatttacatcctaatgcacgaagacatttgagattcggtggaaaccctctaa 18682170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 462 - 558
Target Start/End: Original strand, 18682168 - 18682266
Alignment:
Q  462 taaggtgacattcattaaggcactcgggaagaattttgaaattgccataggataagtctagtcgtttcacatta--acacacgacttgagaactatttg 558  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||   ||||||||||  |||||||||||||||||||||||    
T  18682168 taaggtgacattcactaaggcactcgggaagaattttgaaattgccaaaggataagtctagaaatttcacattaacacacacgacttgagaactatttg 18682266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 18700966 - 18701029
Alignment:
Q  75 aacatccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaatt 138  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18700966 aacatccggaagaataataatagaagttatagatgggatctttttacagaaccagaaagaaatt 18701029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 1e-58; HSPs: 68)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 79 - 430
Target Start/End: Original strand, 27662399 - 27662746
Alignment:
Q  79 tccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgatcca---cccctgctttgatgctcgaaccaatctggaa 175  Q
    ||||||| || ||||||| ||||||||||||||||||||||||| |||||||||||||||||       ||||||  |||||||||||||||||||||||    
T  27662399 tccggaataagaataatacaagttatagaagggatctttttacataaccagaaagaaattgagttgtgtcccctgacttgatgctcgaaccaatctggaa 27662498  T
Q  176 tcctaatcacctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagtttagcataagatata-tattacacattgttg 274  Q
    |||      ||||||||||| |||| |||  ||||||| |||| ||||| || || | | |||||||| ||||||||||||| | |||| ||   ||| |    
T  27662499 tcc------cctctgttccggttggcaaaacaatattgttgcaaccagcatcgtgcagtcgctgttagattagcataagatacagtatttcag--tgtgg 27662590  T
Q  275 attatatatgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttac 374  Q
    || ||||||||||||||| ||||||||||| | ||||||| |||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27662591 ataatatatgaaatactaaatatcaaataccagtgcaagataaaataaaaacaaacctgactcaataacattcttctacttgaggaactcaatgatttac 27662690  T
Q  375 atttgaatgcttcaagatatttgagattcggtggaaaccctctaatttcctcaaga 430  Q
    ||     ||| | ||||| | | ||||| ||||||| |||||||||||||||||||    
T  27662691 atccttctgcataaagatttgttagattgggtggaatccctctaatttcctcaaga 27662746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 93 - 369
Target Start/End: Complemental strand, 26638526 - 26638252
Alignment:
Q  93 aatagaagttatagaagggatctttttacagaaccagaaagaaattgatcca---cccctgctttgatgctcgaaccaatctggaatcctaatcacctct 189  Q
    ||||||||| |||||||||||||||||||  ||||||||||||||||  |||   |||||||||||||||||||||||||||||||||       |||||    
T  26638526 aatagaagtaatagaagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatct------cctct 26638433  T
Q  190 gttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagtttagcataagatatatattacacattgttgattatatatgaaata 289  Q
    |||| | |||| |||| |||||  ||||| ||||| ||||||| || |||||||||||| |||||||||||  |||||||| |  | |||||||||||||    
T  26638432 gttctggttggaaaacgaatatcagtgcatccagcttcatgtagtttctgttagtttagtataagatatat--tacacattatcaaatatatatgaaata 26638335  T
Q  290 ctacatatcaaatactattgcaagaaaaaacaacaacaa---acctgactcaacaacattcttctacttgaggaactcaatga 369  Q
    ||| ||| |||||||||| |||||| |||||||||||||   ||||||||||| | | |||||||||||||||||||||||||    
T  26638334 ctatataacaaatactatggcaagataaaacaacaacaacaaacctgactcaatagccttcttctacttgaggaactcaatga 26638252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 93 - 369
Target Start/End: Complemental strand, 26744492 - 26744218
Alignment:
Q  93 aatagaagttatagaagggatctttttacagaaccagaaagaaattgatcca---cccctgctttgatgctcgaaccaatctggaatcctaatcacctct 189  Q
    ||||||||| |||||||||||||||||||  ||||||||||||||||  |||   |||||||||||||||||||||||||||||||||       |||||    
T  26744492 aatagaagtaatagaagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatct------cctct 26744399  T
Q  190 gttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagtttagcataagatatatattacacattgttgattatatatgaaata 289  Q
    |||| | |||| |||| |||||  ||||| ||||| ||||||| || |||||||||||| |||||||||||  |||||||| |  | |||||||||||||    
T  26744398 gttctggttggaaaacgaatatcagtgcatccagcttcatgtagtttctgttagtttagtataagatatat--tacacattatcaaatatatatgaaata 26744301  T
Q  290 ctacatatcaaatactattgcaagaaaaaacaacaacaa---acctgactcaacaacattcttctacttgaggaactcaatga 369  Q
    ||| ||| |||||||||| |||||| |||||||||||||   ||||||||||| | | |||||||||||||||||||||||||    
T  26744300 ctatataacaaatactatggcaagataaaacaacaacaacaaacctgactcaatagccttcttctacttgaggaactcaatga 26744218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 275 - 551
Target Start/End: Complemental strand, 26887052 - 26886777
Alignment:
Q  275 attatatatgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttac 374  Q
    ||||||||||||| |||| ||||||||||||||||||||| | ||||| |||||||||||||||| ||||||||||||||||||||||||||||| |  |    
T  26887052 attatatatgaaa-actaaatatcaaatactattgcaagatagaacaaaaacaaacctgactcaataacattcttctacttgaggaactcaatgaatggc 26886954  T
Q  375 atttgaatgcttcaagatatttgagattcggtggaaaccctctaatttcctcaagatgctcgttgtaattcaataggagggtcctcataaggtgacattc 474  Q
    |||| |  ||   ||| | ||| ||||| ||||| | |||||||||||||||||||  || |   | |||||||   ||  |||| | ||||||||||||    
T  26886953 attttatagcagaaaggtctttaagatttggtggtatccctctaatttcctcaagagacttgcaatgattcaattcaagtatcctaagaaggtgacattc 26886854  T
Q  475 attaaggcactcgggaagaattttgaaattgccataggataagtctagtcgtttcacattaacacacgacttgagaa 551  Q
     ||||||||||||||||||||||||||||||   |  |||||||||||  |||||||||||||| || |||||||||    
T  26886853 cttaaggcactcgggaagaattttgaaattgttctttgataagtctagatgtttcacattaacaaaccacttgagaa 26886777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 96 - 370
Target Start/End: Complemental strand, 26626248 - 26625981
Alignment:
Q  96 agaagttatagaagggatctttttacagaaccagaaagaaattgatcca---cccctgctttgatgctcgaaccaatctggaatcctaatcacctctgtt 192  Q
    |||||| |||||||||||||||||||  ||||||||||||||||        |||||| |||||||||||||||||||||||||||      ||||| |     
T  26626248 agaagtaatagaagggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctggaatcc------cctctttg 26626155  T
Q  193 ccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagtttagcataagatatatattacacattgttgattatatatgaaatacta 292  Q
     ||||  |||||| |||||||||||| ||||||||||||| || ||||| |||||| |||| ||||||     ||||| |  ||||||||| ||||||||    
T  26626154 gcgttatggaaacgaatattggtgcatccagcctcatgtactttctgtttgtttagaataaaatatatt----acattatcaattatatataaaatacta 26626059  T
Q  293 catatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgat 370  Q
      | |   |||||||||||||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||    
T  26626058 tgtgttttatactattgcaagaaaaaaccacaacaaacctgacttaataacattcttctagttgaggaactcaatgat 26625981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 96 - 370
Target Start/End: Complemental strand, 26732225 - 26731958
Alignment:
Q  96 agaagttatagaagggatctttttacagaaccagaaagaaattgatcca---cccctgctttgatgctcgaaccaatctggaatcctaatcacctctgtt 192  Q
    |||||| |||||||||||||||||||  ||||||||||||||||        |||||| |||||||||||||||||||||||||||      ||||| |     
T  26732225 agaagtaatagaagggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctggaatcc------cctctttg 26732132  T
Q  193 ccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagtttagcataagatatatattacacattgttgattatatatgaaatacta 292  Q
     ||||  |||||| |||||||||||| ||||||||||||| || ||||| |||||| |||| ||||||     ||||| |  ||||||||| ||||||||    
T  26732131 gcgttatggaaacgaatattggtgcatccagcctcatgtactttctgtttgtttagaataaaatatatt----acattatcaattatatataaaatacta 26732036  T
Q  293 catatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgat 370  Q
      | |   |||||||||||||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||    
T  26732035 tgtgttttatactattgcaagaaaaaaccacaacaaacctgacttaataacattcttctagttgaggaactcaatgat 26731958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 78 - 430
Target Start/End: Complemental strand, 26851662 - 26851299
Alignment:
Q  78 atccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatc 177  Q
    |||||||| |||||||||| | ||||||||||||||||||||||  |||||||| |||||||      |||||||||| |||||||||||||||||||||    
T  26851662 atccggaacaataataatacatgttatagaagggatctttttacgaaaccagaaggaaattgtgttttccctgctttggtgctcgaaccaatctggaatc 26851563  T
Q  178 ctaatcacctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagtttagca-taagatatat-attacacattg---- 271  Q
    |      | ||||||||| |||| |||  ||||||||| || ||||| ||||||| |||||||||  |||||| ||| |||||| |||||||| |         
T  26851562 c------cttctgttccgcttggcaaaataatattggtacatccagcgtcatgtagttgctgttacattagcaataaaatatattattacacaataacat 26851469  T
Q  272 --------ttgatta-tatatgaaatactacatat--caaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgagga 360  Q
            |||| || || ||||||||||| ||||  ||||||||| ||||||| ||||||| |||||||||||||||| ||||||||||| ||||||||    
T  26851468 tcttctacttgaataataaatgaaatactatatatatcaaatactactgcaagataaaacaataacaaacctgactcaataacattcttctgcttgagga 26851369  T
Q  361 actcaatgatttacatttgaatgcttcaagatatttgagattcggtggaaaccctctaatttcctcaaga 430  Q
    |||||||||||| || |  | |||    || || || ||||||||||||| |||||||||||||||||||    
T  26851368 actcaatgatttgcaatctattgcagacaggtaatttagattcggtggaatccctctaatttcctcaaga 26851299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 101 - 372
Target Start/End: Original strand, 25491198 - 25491457
Alignment:
Q  101 ttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcctaatcacctctgttccgtttgg 200  Q
    |||| |||||||| | |||||| ||||||||||||||||  |  |||||  |||| |||||||||||||||||||| |      ||||  ||  ||||||    
T  25491198 ttattgaagggatttctttacaaaaccagaaagaaattgtccgtcccctaatttggtgctcgaaccaatctggaattc------cctcacttgtgtttgg 25491291  T
Q  201 gaaacaaatattggtgcacccagcctcatgtaattgctgttagtttagcataagatatatattacacattgttgattatatatgaaatactacatatcaa 300  Q
     |||||||| | |||||| |||||||| |||| ||||||||||||||| ||||||||||||||||||  ||   |||||||||||||||||| |||  ||    
T  25491292 caaacaaatctcggtgcatccagcctcgtgtagttgctgttagtttagaataagatatatattacactatga--attatatatgaaatactatataaaaa 25491389  T
Q  301 atactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgattt 372  Q
    | |  | || | |||||||||   ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25491390 a-agaagtgaaggaaaaaaca---acaaacctgactcaataacattcttctacttgaggaactcaatgattt 25491457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 305 - 430
Target Start/End: Complemental strand, 26649390 - 26649265
Alignment:
Q  305 tattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttacatttgaatgcttcaagatatttgagattcg 404  Q
    |||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||| | |||||   |||  |||| ||||| |    
T  26649390 tattgcaagataaaacaacaacgaacctgactcaataacattcttctacttgaggaactcaatgattcacatctcaatgcagaaagccatttaagatttg 26649291  T
Q  405 gtggaaaccctctaatttcctcaaga 430  Q
    |||||| ||| |||||||||||||||    
T  26649290 gtggaatccccctaatttcctcaaga 26649265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 305 - 430
Target Start/End: Complemental strand, 26755358 - 26755233
Alignment:
Q  305 tattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttacatttgaatgcttcaagatatttgagattcg 404  Q
    |||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||| | |||||   |||  |||| ||||| |    
T  26755358 tattgcaagataaaacaacaacgaacctgactcaataacattcttctacttgaggaactcaatgattcacatctcaatgcagaaagccatttaagatttg 26755259  T
Q  405 gtggaaaccctctaatttcctcaaga 430  Q
    |||||| ||| |||||||||||||||    
T  26755258 gtggaatccccctaatttcctcaaga 26755233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 308 - 558
Target Start/End: Original strand, 27674826 - 27675076
Alignment:
Q  308 tgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttacatttgaatgcttcaagatatttgagattcggtg 407  Q
    ||||| ||||||||||||| |||||||||||  ||||||||||||| |||||||||||||||||||||||   ||||   ||| | ||| ||||| ||||    
T  27674826 tgcaataaaaaacaacaactaacctgactcattaacattcttctacatgaggaactcaatgatttacattgatatgcggaaagctctttaagatttggtg 27674925  T
Q  408 gaaaccctctaatttcctcaagatgctcgttgtaattcaataggagggtcctcataaggtgacattcattaaggcactcgggaagaattttgaaattgcc 507  Q
    ||| |||||||||||||||||||     |  ||||| |||    ||   | | | | ||||||||||| |||||||||| ||||||||||||||||||      
T  27674926 gaatccctctaatttcctcaagagaagagcagtaatgcaaaccaagatgcttaagatggtgacattcactaaggcactcaggaagaattttgaaattgtt 27675025  T
Q  508 ataggataagtctagtcgtttcacattaacacacgacttgagaactatttg 558  Q
    ||  |||||||||||   || ||||||||||||| |||| |||||||||||    
T  27675026 atgtgataagtctagcaattccacattaacacaccacttaagaactatttg 27675076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 297 - 430
Target Start/End: Complemental strand, 26805425 - 26805290
Alignment:
Q  297 tcaaatactat--tgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttacatttgaatgcttcaagatat 394  Q
    |||||||||||  ||||| |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||     |||   ||| | |    
T  26805425 tcaaatactatagtgcaataaaaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagctct 26805326  T
Q  395 ttgagattcggtggaaaccctctaatttcctcaaga 430  Q
    || ||||||||||||| |||||||||||||||||||    
T  26805325 tttagattcggtggaatccctctaatttcctcaaga 26805290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 80 - 372
Target Start/End: Complemental strand, 28795522 - 28795256
Alignment:
Q  80 ccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcct 179  Q
    |||||| || |||||||||| | |||||||||||||||||||| |||||||| |||||||   | ||||||||||| ||||||||||||||||||||||     
T  28795522 ccggaaaaagaataatagaaataatagaagggatctttttacaaaaccagaaggaaattgtgtctcccctgctttggtgctcgaaccaatctggaatcc- 28795424  T
Q  180 aatcacctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagtttagcataagatatatattacacattgttgattat 279  Q
     |||||     |   ||||||||||| |||||   |||| |||||||||||||  | |||||||||||| |||||||||||     ||||| | |||| |    
T  28795423 catcac-----tgaagtttgggaaacgaatat---tgcatccagcctcatgtagcttctgttagtttagaataagatatat----tacattatcgattgt 28795336  T
Q  280 atatgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgattt 372  Q
    ||||| ||||||  |          |||||||||| ||   ||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  28795335 atatgtaatactcta----------tattgcaagataa---aacaacaaacctgactcaatagcattcttctacttgaggaactcaatgattt 28795256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 93 - 366
Target Start/End: Complemental strand, 26952724 - 26952471
Alignment:
Q  93 aatagaagttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcctaatcacctctgtt 192  Q
    |||| |||||||||||||||||||| |||  ||||||||||||||||   | |||||| |||| ||||| ||||||||||||||||      ||||||||    
T  26952724 aatacaagttatagaagggatctttctacgaaaccagaaagaaattgtgtctcccctggtttggtgctcaaaccaatctggaatcc------cctctgtt 26952631  T
Q  193 ccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagtttagcataagatatatattacacattgttgattatatatgaaatacta 292  Q
      ||||||||||  ||||| |||||| |||||||  | || || |||| ||||||| ||||||||| |     | ||| | |||||||||| ||||||||    
T  26952630 ttgtttgggaaatgaatataggtgcatccagccttgtttagtttctgtaagtttagaataagatatgtt----aaattatcgattatatatcaaatacta 26952535  T
Q  293 catatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaa 366  Q
     ||||          ||||||| |||||||||||||||||||||||| | |||||||||||||| |||||||||    
T  26952534 tatat----------tgcaagataaaacaacaacaaacctgactcaatagcattcttctacttgcggaactcaa 26952471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 280 - 430
Target Start/End: Original strand, 27601946 - 27602097
Alignment:
Q  280 atatgaaatactacatatcaaatactattgcaagaaaaaacaacaa-caaacctgactcaacaacattcttctacttgaggaactcaatgatttacattt 378  Q
    |||| ||||||||  |||||||||||| ||||  | |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| |     
T  27601946 atatcaaatactatctatcaaatactactgcacaataaaacaacaaacaaacctgactcaataacattcttctacttgaggaactcaatgattcacagtc 27602045  T
Q  379 gaatgcttcaagata-tttgagattcggtggaaaccctctaatttcctcaaga 430  Q
       ||| | || ||| ||| ||||| |||||||||||||||||||||||||||    
T  27602046 ctttgcatgaa-atattttaagatttggtggaaaccctctaatttcctcaaga 27602097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 304 - 556
Target Start/End: Complemental strand, 31287491 - 31287239
Alignment:
Q  304 ctattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttacatttgaatgcttcaagatatttgagattc 403  Q
    ||||||||||||||||||||||   |||||||||   |||||||||||||||||||||||||| |||| ||||||  | ||   ||| | ||  |||||     
T  31287491 ctattgcaagaaaaaacaacaa---acctgactcgttaacattcttctacttgaggaactcaacgattcacatttataagcggaaagctcttcaagattt 31287395  T
Q  404 ggtggaaaccctctaatttcctcaagatgctcgttgtaattcaataggagggtcctcataaggtgacattcattaaggcactcgggaagaattttgaaat 503  Q
    ||||||| |||||||||||||||||||  || |    |||  |||   | | || |||||||||||||||||||||| |||||||||||||| |||||||    
T  31287394 ggtggaatccctctaatttcctcaagagacttgcaacaatcgaattcaaagatcttcataaggtgacattcattaagacactcgggaagaatattgaaat 31287295  T
Q  504 t---gccataggataagtctagtcgtttcacattaacacacgacttgagaactatt 556  Q
    |   |  ||  ||||||||||| | ||||||||||||| || ||||||||| ||||    
T  31287294 tgaagttatgcgataagtctagccttttcacattaacaaaccacttgagaagtatt 31287239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 275 - 505
Target Start/End: Complemental strand, 26962059 - 26961825
Alignment:
Q  275 attatatatgaaatactacatatcaaatactat----tgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgat 370  Q
    |||||||||||||||||| ||||||||||||||    ||||||| |||||||||||||||||||||||| | | |||||||||||    |||||||||||    
T  26962059 attatatatgaaatactatatatcaaatactatatattgcaagataaaacaacaacaaacctgactcaatagccttcttctactttccaaactcaatgat 26961960  T
Q  371 ttacatttgaatgcttcaagatatttgagattcggtggaaaccctctaatttcctcaagatgctcgttgtaattcaataggagggtcctcataaggtgac 470  Q
    | |||| | |||||   |||   |   ||||| ||||||| |||||||||||||||||||  || |  || || ||| |  ||   ||  | | ||||||    
T  26961959 tcacatctcaatgcagaaagccgtccaagatttggtggaatccctctaatttcctcaagaaacttgcagtcatccaacacaagctccccaagacggtgac 26961860  T
Q  471 attcattaaggcactcgggaagaattttgaaattg 505  Q
    ||||| |||||||||||||||||||||||||||||    
T  26961859 attcactaaggcactcgggaagaattttgaaattg 26961825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 93 - 376
Target Start/End: Original strand, 27590170 - 27590446
Alignment:
Q  93 aatagaagttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcctaatcacctctgtt 192  Q
    |||| |||| ||||||||||| | |||||  ||||||||||||||||   | ||||||||||| ||||| ||||||||||| ||||      ||||||||    
T  27590170 aatataagtcatagaagggatttctttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcc------cctctgtt 27590263  T
Q  193 ccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagtttagc----ata-agatatatattacacattgttgattatatatgaaa 287  Q
    |||||||||||| ||| ||  ||||| | ||||||||||| || |||||||| ||      ||| | ||||||||||||||||    || | |||| ||     
T  27590264 ccgtttgggaaataaaaataagtgcatcgagcctcatgtagttcctgttagtgtatatgaaatacaaatatatattacacatt----atcaaatataaa- 27590358  T
Q  288 tactacatatcaaatactat--tgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttacat 376  Q
       || |||| |||||||||  ||||| ||||||||||||||||||||| |||  ||||||||||||||||| ||||||||||||| ||||    
T  27590359 ---tatatatgaaatactatagtgcaataaaaaacaacaacaaacctgattcattaacattcttctacttgatgaactcaatgattcacat 27590446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 465 - 556
Target Start/End: Original strand, 27608529 - 27608620
Alignment:
Q  465 ggtgacattcattaaggcactcgggaagaattttgaaattgccataggataagtctagtcgtttcacattaacacacgacttgagaactatt 556  Q
    ||||||||||| |||||||||| ||||||||||||||||||| ||| ||||||||||| | | ||||||||||| || ||||||||| ||||    
T  27608529 ggtgacattcactaaggcactcaggaagaattttgaaattgctatatgataagtctagacatgtcacattaacaaaccacttgagaagtatt 27608620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 80 - 178
Target Start/End: Complemental strand, 28789498 - 28789400
Alignment:
Q  80 ccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcc 178  Q
    |||||| || |||||||||| |  ||||||||||||||||||  ||||||||||||||||   | ||||||||||| ||||||||||||||||||||||    
T  28789498 ccggaaaaagaataatagaaatattagaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatcc 28789400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 283 - 430
Target Start/End: Complemental strand, 25582641 - 25582496
Alignment:
Q  283 tgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttacatttgaat 382  Q
    |||||||||| || |||||||||| ||||| ||||||  |||||||||||||||||  ||||||||| ||||||||||||||||||| | |||  ||| |    
T  25582641 tgaaatactatatgtcaaatactaatgcaataaaaaa--acaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacaaatgact 25582544  T
Q  383 gcttcaagatatttgagattcggtggaaaccctctaatttcctcaaga 430  Q
    ||   ||||  ||  ||||| ||||||| ||||||||||||| |||||    
T  25582543 gcaaaaagaatttcaagatttggtggaatccctctaatttccacaaga 25582496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 283 - 430
Target Start/End: Complemental strand, 26058853 - 26058708
Alignment:
Q  283 tgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttacatttgaat 382  Q
    |||||||||| || |||||||||| ||||| ||||||  |||||||||||||||||  ||||||||| ||||||||||||||||||| | |||  ||| |    
T  26058853 tgaaatactatatgtcaaatactagtgcaataaaaaa--acaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacaaatgact 26058756  T
Q  383 gcttcaagatatttgagattcggtggaaaccctctaatttcctcaaga 430  Q
    ||   ||||  ||  ||||| ||||||| ||||||||||||| |||||    
T  26058755 gcaaaaagaatttcaagatttggtggaatccctctaatttccacaaga 26058708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 283 - 430
Target Start/End: Complemental strand, 26078823 - 26078678
Alignment:
Q  283 tgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttacatttgaat 382  Q
    |||||||||| || |||||||||| ||||| ||||||  |||||||||||||||||  ||||||||| ||||||||||||||||||| | |||  ||| |    
T  26078823 tgaaatactatatgtcaaatactagtgcaataaaaaa--acaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacaaatgact 26078726  T
Q  383 gcttcaagatatttgagattcggtggaaaccctctaatttcctcaaga 430  Q
    ||   ||||  ||  ||||| ||||||| ||||||||||||| |||||    
T  26078725 gcaaaaagaatttcaagatttggtggaatccctctaatttccacaaga 26078678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 80 - 556
Target Start/End: Complemental strand, 26659107 - 26658645
Alignment:
Q  80 ccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcct 179  Q
    ||||||||| || |||| || | |||||||||||||||||||  ||||||||||||| || |   |||||| |||| ||||||||||||||||| |||||    
T  26659107 ccggaagaagaagaatacaaataatagaagggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgggatcct 26659008  T
Q  180 aatcacctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagtttagcataagatata-tattacacattgttgatta 278  Q
          ||| |  ||| |||| ||| ||  |   || || ||||||||||||| || ||||||||||||||||| ||||| || |||||     ||| |     
T  26659007 ------ctcagccccggttggaaaataataacgagtacatccagcctcatgtagtttctgttagtttagcataaaatatattactacac-----tgaat- 26658920  T
Q  279 tatatgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttacattt 378  Q
    ||||| ||| |||| ||||  ||||||||| ||||||||   |||| |||||||| ||||| ||||||||||||| ||||||  ||||||| | ||| ||    
T  26658919 tatattaaaaactatatattgaatactattacaagaaaa---aacatcaaacctggctcaataacattcttctacatgaggatgtcaatgaataacagtt 26658823  T
Q  379 gaatgcttcaagatatttgagattcggtggaaaccctctaatttcctcaagatgctcgttgtaattcaataggagggtcctcataaggtgacattcatta 478  Q
     | ||| || |  | || ||||||| |||||| ||||||||||||||||||||  | |   | || |||    ||   | | | ||||||||||||| ||    
T  26658822 cactgcatccaagtgttcgagattctgtggaatccctctaatttcctcaagatattggcatttatccaaataaagatgcttaagaaggtgacattcacta 26658723  T
Q  479 aggcactcgggaagaattttgaaattgccataggataagtctagtcgtttcacattaacacacgacttgagaactatt 556  Q
    ||||||||||| |||||||||||||||   |  ||||||| |||   |||||||||||||||| ||||||||| ||||    
T  26658722 aggcactcgggtagaattttgaaattgttctttgataagtttagatatttcacattaacacaccacttgagaagtatt 26658645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 80 - 556
Target Start/End: Complemental strand, 26765078 - 26764616
Alignment:
Q  80 ccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcct 179  Q
    ||||||||| || |||| || | |||||||||||||||||||  ||||||||||||| || |   |||||| |||| ||||||||||||||||| |||||    
T  26765078 ccggaagaagaagaatacaaataatagaagggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgggatcct 26764979  T
Q  180 aatcacctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagtttagcataagatata-tattacacattgttgatta 278  Q
          ||| |  ||| |||| ||| ||  |   || || ||||||||||||| || ||||||||||||||||| ||||| || |||||     ||| |     
T  26764978 ------ctcagccccggttggaaaataataacgagtacatccagcctcatgtagtttctgttagtttagcataaaatatattactacac-----tgaat- 26764891  T
Q  279 tatatgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttacattt 378  Q
    ||||| ||| |||| ||||  ||||||||| ||||||||   |||| |||||||| ||||| ||||||||||||| ||||||  ||||||| | ||| ||    
T  26764890 tatattaaaaactatatattgaatactattacaagaaaa---aacatcaaacctggctcaataacattcttctacatgaggatgtcaatgaataacagtt 26764794  T
Q  379 gaatgcttcaagatatttgagattcggtggaaaccctctaatttcctcaagatgctcgttgtaattcaataggagggtcctcataaggtgacattcatta 478  Q
     | ||| || |  | || ||||||| |||||| ||||||||||||||||||||  | |   | || |||    ||   | | | ||||||||||||| ||    
T  26764793 cactgcatccaagtgttcgagattctgtggaatccctctaatttcctcaagatattggcatttatccaaataaagatgcttaagaaggtgacattcacta 26764694  T
Q  479 aggcactcgggaagaattttgaaattgccataggataagtctagtcgtttcacattaacacacgacttgagaactatt 556  Q
    ||||||||||| |||||||||||||||   |  ||||||| |||   |||||||||||||||| ||||||||| ||||    
T  26764693 aggcactcgggtagaattttgaaattgttctttgataagtttagatatttcacattaacacaccacttgagaagtatt 26764616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 283 - 369
Target Start/End: Complemental strand, 25513809 - 25513725
Alignment:
Q  283 tgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatga 369  Q
    |||||||||| || |||||||||| ||||| ||||||  |||||||||||||||||  ||||||||| |||||||||||||||||||    
T  25513809 tgaaatactatatgtcaaatactagtgcaataaaaaa--acaacaaacctgactcattaacattcttatacttgaggaactcaatga 25513725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 283 - 369
Target Start/End: Complemental strand, 25547914 - 25547830
Alignment:
Q  283 tgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatga 369  Q
    |||||||||| || |||||||||| ||||| ||||||  |||||||||||||||||  ||||||||| |||||||||||||||||||    
T  25547914 tgaaatactatatgtcaaatactagtgcaataaaaaa--acaacaaacctgactcattaacattcttatacttgaggaactcaatga 25547830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 283 - 369
Target Start/End: Complemental strand, 26145931 - 26145847
Alignment:
Q  283 tgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatga 369  Q
    |||||||||| || |||||||||| ||||| ||||||  |||||||||||||||||  ||||||||| |||||||||||||||||||    
T  26145931 tgaaatactatatgtcaaatactagtgcaataaaaaa--acaacaaacctgactcattaacattcttatacttgaggaactcaatga 26145847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 465 - 556
Target Start/End: Complemental strand, 27681711 - 27681620
Alignment:
Q  465 ggtgacattcattaaggcactcgggaagaattttgaaattgccataggataagtctagtcgtttcacattaacacacgacttgagaactatt 556  Q
    |||||||||||  ||||||||| ||||||||||||||||||| | | |||||||||||  || ||| |||||||||| ||||||||||||||    
T  27681711 ggtgacattcacgaaggcactcaggaagaattttgaaattgctaaatgataagtctagatgtgtcatattaacacaccacttgagaactatt 27681620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 316 - 375
Target Start/End: Complemental strand, 27681860 - 27681801
Alignment:
Q  316 aaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttaca 375  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||    
T  27681860 aaaacaacaactaacctgactcattaacattcttctacttgaggaactcaatgatttaca 27681801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 297 - 377
Target Start/End: Original strand, 27695830 - 27695912
Alignment:
Q  297 tcaaatactat--tgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttacatt 377  Q
    |||||||||||  ||||| |||||||||||||||||||||||||  ||||||||||||| ||| |||||||||||||| ||||    
T  27695830 tcaaatactatagtgcaataaaaaacaacaacaaacctgactcattaacattcttctacatgatgaactcaatgatttgcatt 27695912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 84 - 260
Target Start/End: Complemental strand, 26876688 - 26876518
Alignment:
Q  84 aagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcctaatc 183  Q
    ||||| || |||||||  |||| |||||||||||||||  |||||||||||||||| |   ||| || |||| || | |||||| ||||||||||         
T  26876688 aagaagaacaatagaacgtataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc----- 26876594  T
Q  184 acctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagtttagcataagatatat 260  Q
     |||||||||||||||||| |  ||||| |||||| ||||||||||||| || ||| |||||||||||  |||||||    
T  26876593 -cctctgttccgtttgggagaagaatataggtgcatccagcctcatgtagtttctggtagtttagcatgtgatatat 26876518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 316 - 429
Target Start/End: Original strand, 27608380 - 27608493
Alignment:
Q  316 aaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttacatttgaatgcttcaagatatttgagattcggtggaaaccct 415  Q
    ||||||||||| |||||||||||  ||| ||||| |||||||||||||||||||||| |||| |  |||   |||  |||| ||||| ||||||| ||||    
T  27608380 aaaacaacaactaacctgactcattaactttcttttacttgaggaactcaatgatttgcattcgcttgcagaaagccatttaagatttggtggaatccct 27608479  T
Q  416 ctaatttcctcaag 429  Q
    ||||||||||||||    
T  27608480 ctaatttcctcaag 27608493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 105 - 260
Target Start/End: Original strand, 27657793 - 27657943
Alignment:
Q  105 agaagggatctttttacagaaccagaaagaaattg-atccacccctgctttgatgctcgaaccaatctggaatcctaatcacctctgttccgtttgggaa 203  Q
    |||||||||||||||||  |||||||||||||||| |||  |||||| |||| |||||| |||||||||||||||      ||||| || |||||| |||    
T  27657793 agaagggatctttttacgaaaccagaaagaaattgtatctccccctgatttggtgctcgtaccaatctggaatcc------cctcttttacgtttgagaa 27657886  T
Q  204 acaaatattggtgcacccagcctcatgtaattgctgttagtttagcataagatatat 260  Q
    || ||||| |||||| ||||| |||| ||  | ||||| |||||| |||||||||||    
T  27657887 acgaatatcggtgcatccagcatcatttaggttctgtttgtttagaataagatatat 27657943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 79 - 247
Target Start/End: Original strand, 27715527 - 27715689
Alignment:
Q  79 tccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcc 178  Q
    ||||||| |||||| ||| |||||||||||||||| | |||||  ||||||||||||||||     ||||||||||| ||||| ||||||||||| ||||    
T  27715527 tccggaaaaataattatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatcc 27715626  T
Q  179 taatcacctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagttta 247  Q
          | |||||||||||||||||   ||||| |||||| ||||||| ||||| || ||||| |||||    
T  27715627 ------catctgttccgtttgggaatttaatataggtgcatccagcctgatgtagtttctgtttgttta 27715689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 79 - 244
Target Start/End: Original strand, 27695597 - 27695759
Alignment:
Q  79 tccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcc 178  Q
    ||||||||||||| |||| ||| |||||||||||| | ||||   ||||| ||||||||||   | ||||||||||| ||||| ||||||||||| ||||    
T  27695597 tccggaagaataaaaatacaagatatagaagggatttctttatgaaaccaaaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcc 27695696  T
Q  179 taatcacctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagt 244  Q
        || |||||||||||||||||||  || |   ||||| | ||||||||||| |||||||||||    
T  27695697 ---ccagctctgttccgtttgggaaatcaaaacgagtgcatcgagcctcatgtagttgctgttagt 27695759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 247
Target Start/End: Complemental strand, 26805655 - 26805493
Alignment:
Q  79 tccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcc 178  Q
    ||||||||||||| |||| | |||||||||||||| | |||||  ||||||||||||||||     ||| ||||||| ||||| ||||||||||| ||||    
T  26805655 tccggaagaataaaaatacatgttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccttgctttggtgctcaaaccaatctggtatcc 26805556  T
Q  179 taatcacctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagttta 247  Q
          ||||||||||||||||||||  || || ||| ||   ||||||||||| |||||||| |||||    
T  26805555 ------cctctgttccgtttgggaaaacaaaataggtccattgagcctcatgtagttgctgttggttta 26805493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 465 - 553
Target Start/End: Original strand, 27715909 - 27715997
Alignment:
Q  465 ggtgacattcattaaggcactcgggaagaattttgaaattgccataggataagtctagtcgtttcacattaacacacgacttgagaact 553  Q
    ||||||||||| |||||||||| ||||||||||||||||||| |||  |||||| |||   | ||| |||||||||| |||||||||||    
T  27715909 ggtgacattcactaaggcactcaggaagaattttgaaattgctatataataagtttagagatgtcatattaacacaccacttgagaact 27715997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 369
Target Start/End: Complemental strand, 25485924 - 25485840
Alignment:
Q  283 tgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatga 369  Q
    |||||||||| || |||||||||| |||||  |||||  |||||||||||||||||  ||||||||| ||||||||||| |||||||    
T  25485924 tgaaatactatatgtcaaatactagtgcaattaaaaa--acaacaaacctgactcattaacattcttatacttgaggaattcaatga 25485840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 429
Target Start/End: Original strand, 27715760 - 27715873
Alignment:
Q  316 aaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttacatttgaatgcttcaagatatttgagattcggtggaaaccct 415  Q
    ||||||||||| |||||||||||  || |||||| ||||||||||||||||||||| ||||     ||| | ||  | ||| ||||| ||||||| ||||    
T  27715760 aaaacaacaactaacctgactcattaatattcttttacttgaggaactcaatgattgacatccttgtgcattaatctcttttagatttggtggaatccct 27715859  T
Q  416 ctaatttcctcaag 429  Q
    ||||||||||||||    
T  27715860 ctaatttcctcaag 27715873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 372
Target Start/End: Complemental strand, 28789296 - 28789232
Alignment:
Q  305 tattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgattt 372  Q
    |||||||||| ||||||||||   ||||||||||| | |||| |||||||||||||||||||||||||    
T  28789296 tattgcaagataaaacaacaa---acctgactcaatagcatttttctacttgaggaactcaatgattt 28789232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 26808523 - 26808430
Alignment:
Q  152 tttgatgctcgaaccaatctggaatcctaatcacctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagtttagcat 251  Q
    |||| ||||||||||||||||||||||      |||||||||  ||||| ||||||||||||||| |  ||||||||||||  | |||||||||||||||    
T  26808523 tttggtgctcgaaccaatctggaatcc------cctctgttctttttggcaaacaaatattggtggatacagcctcatgtaggttctgttagtttagcat 26808430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 26827003 - 26826915
Alignment:
Q  90 aataatagaagttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcc 178  Q
    ||||||||||  |||||||||||| |||||||  ||||||||||||||||   | || |||||||| ||||| |||| |||||||||||    
T  26827003 aataatagaacgtatagaagggatttttttacgaaaccagaaagaaattgtgtctcctctgctttggtgctcaaaccgatctggaatcc 26826915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 506
Target Start/End: Original strand, 27602130 - 27602173
Alignment:
Q  463 aaggtgacattcattaaggcactcgggaagaattttgaaattgc 506  Q
    ||||||||||||| |||||||||| |||||||||||||||||||    
T  27602130 aaggtgacattcactaaggcactcaggaagaattttgaaattgc 27602173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 27674585 - 27674684
Alignment:
Q  79 tccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcc 178  Q
    |||||| |||||  |||| |||| ||||||||||| | |||||  ||||||||||||||||   | ||||||||||| ||||| ||||||||||| ||||    
T  27674585 tccggaggaatacaaatataagtcatagaagggatttctttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcc 27674684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 465 - 556
Target Start/End: Original strand, 27696000 - 27696091
Alignment:
Q  465 ggtgacattcattaaggcactcgggaagaattttgaaattgccataggataagtctagtcgtttcacattaacacacgacttgagaactatt 556  Q
    |||||| |||| |||||||||| |||||||||||||||| || ||| ||||| |||||   | ||| |||||||||| ||||||||| ||||    
T  27696000 ggtgactttcactaaggcactctggaagaattttgaaatcgctatatgataaatctagatatgtcatattaacacaccacttgagaagtatt 27696091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 370
Target Start/End: Original strand, 27657993 - 27658055
Alignment:
Q  308 tgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgat 370  Q
    ||||| | ||||||||||||||||||||| || |||||||||||| ||||| |||||| ||||    
T  27657993 tgcaacacaaaacaacaacaaacctgactaaataacattcttctagttgagaaactcagtgat 27658055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 465 - 558
Target Start/End: Complemental strand, 26805255 - 26805162
Alignment:
Q  465 ggtgacattcattaaggcactcgggaagaattttgaaattgccataggataagtctagtcgtttcacattaacacacgacttgagaactatttg 558  Q
    ||||||||||| |||| ||||| ||||||||||||||||||   |  ||||| ||||||  ||  |||||||||||| |||| |||||||||||    
T  26805255 ggtgacattcactaagacactcaggaagaattttgaaattgttgtttgataactctagttcttcaacattaacacaccacttaagaactatttg 26805162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 26962210 - 26962084
Alignment:
Q  100 gttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcctaatcacctctgttccgtttg 199  Q
    ||||||| |||||||||||| |   |||||||||||| ||   | ||| | ||||| ||||| ||||||||||||||||      ||||  |||||||||    
T  26962210 gttatagtagggatctttttgcgataccagaaagaaaatgtgtctccctttctttggtgctcaaaccaatctggaatcc------cctcacttccgtttg 26962117  T
Q  200 ggaaacaaatattggtgcacccagcctcatgta 232  Q
    |||||| ||| |||||||| |||||||||||||    
T  26962116 ggaaactaatcttggtgcatccagcctcatgta 26962084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 305 - 430
Target Start/End: Complemental strand, 26980323 - 26980198
Alignment:
Q  305 tattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttacatttgaatgcttcaagatatttgagattcg 404  Q
    |||||||| | |||||||||||||||||||||||| | | ||||||||| |    |||| ||||||  |||||||| |||   ||  |  || ||||| |    
T  26980323 tattgcaaaataaaacaacaacaaacctgactcaatagccttcttctacattccaaacttaatgatacacatttgattgccgaaatctcattaagatttg 26980224  T
Q  405 gtggaaaccctctaatttcctcaaga 430  Q
    ||||||||||||||||||||||||||    
T  26980223 gtggaaaccctctaatttcctcaaga 26980198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 463 - 556
Target Start/End: Complemental strand, 28795165 - 28795072
Alignment:
Q  463 aaggtgacattcattaaggcactcgggaagaattttgaaattgccataggataagtctagtcgtttcacattaacacacgacttgagaactatt 556  Q
    ||||| ||||||| |||||||||| |||| || ||||||||||    | |||||||||||   |||||||||||||||| ||||||||| ||||    
T  28795165 aaggtaacattcactaaggcactcaggaataaatttgaaattgttccatgataagtctagcaatttcacattaacacaccacttgagaaatatt 28795072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 369
Target Start/End: Complemental strand, 25076791 - 25076743
Alignment:
Q  321 aacaacaaacctgactcaacaacattcttctacttgaggaactcaatga 369  Q
    ||||||||||||||| ||| |||||||||||||||| |||| |||||||    
T  25076791 aacaacaaacctgacccaataacattcttctacttgtggaattcaatga 25076743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 505
Target Start/End: Complemental strand, 26649230 - 26649190
Alignment:
Q  465 ggtgacattcattaaggcactcgggaagaattttgaaattg 505  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  26649230 ggtgacattcactaaggaactcgggaagaattttgaaattg 26649190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 505
Target Start/End: Complemental strand, 26755198 - 26755158
Alignment:
Q  465 ggtgacattcattaaggcactcgggaagaattttgaaattg 505  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  26755198 ggtgacattcactaaggaactcgggaagaattttgaaattg 26755158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 505
Target Start/End: Complemental strand, 26851264 - 26851224
Alignment:
Q  465 ggtgacattcattaaggcactcgggaagaattttgaaattg 505  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  26851264 ggtgacattcactaaggcactcgggaagaatttttaaattg 26851224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 505
Target Start/End: Complemental strand, 26952372 - 26952332
Alignment:
Q  465 ggtgacattcattaaggcactcgggaagaattttgaaattg 505  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  26952372 ggtggcattcactaaggcactcgggaagaattttgaaattg 26952332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 505
Target Start/End: Complemental strand, 26980163 - 26980123
Alignment:
Q  465 ggtgacattcattaaggcactcgggaagaattttgaaattg 505  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  26980163 ggtgacattcattaaggcactcaggtagaattttgaaattg 26980123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 503
Target Start/End: Complemental strand, 25076644 - 25076609
Alignment:
Q  468 gacattcattaaggcactcgggaagaattttgaaat 503  Q
    |||||||| |||||||||||||||||||||||||||    
T  25076644 gacattcactaaggcactcgggaagaattttgaaat 25076609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 556
Target Start/End: Complemental strand, 25485744 - 25485653
Alignment:
Q  465 ggtgacattcattaaggcactcgggaagaattttgaaattgccataggataagtctagtcgtttcacattaacacacgacttgagaactatt 556  Q
    |||||||||||  ||||||||||||||||||| ||||||||   |  |||||||||||   | ||||||||||| || ||||||||| ||||    
T  25485744 ggtgacattcaccaaggcactcgggaagaattgtgaaattgttctgcgataagtctagaaatgtcacattaacaaaccacttgagaagtatt 25485653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 25486452 - 25486397
Alignment:
Q  124 aaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcct 179  Q
    ||||||||||||||||  || ||||||||||| ||||| |||||||| ||||||||    
T  25486452 aaccagaaagaaattgtgcctcccctgctttggtgctcaaaccaatcaggaatcct 25486397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 505
Target Start/End: Complemental strand, 26638158 - 26638116
Alignment:
Q  463 aaggtgacattcattaaggcactcgggaagaattttgaaattg 505  Q
    |||||||||| || |||||||||| ||||||||||||||||||    
T  26638158 aaggtgacatacactaaggcactcaggaagaattttgaaattg 26638116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 505
Target Start/End: Complemental strand, 26744124 - 26744082
Alignment:
Q  463 aaggtgacattcattaaggcactcgggaagaattttgaaattg 505  Q
    |||||||||| || |||||||||| ||||||||||||||||||    
T  26744124 aaggtgacatacactaaggcactcaggaagaattttgaaattg 26744082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 504
Target Start/End: Original strand, 27662782 - 27662820
Alignment:
Q  466 gtgacattcattaaggcactcgggaagaattttgaaatt 504  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  27662782 gtgacattcactaaggcacttgggaagaattttgaaatt 27662820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 260
Target Start/End: Complemental strand, 25080365 - 25080263
Alignment:
Q  152 tttgatgctcgaaccaatctggaatcctaatcacctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagtttagcat 251  Q
    |||| ||||||||||||||| ||||||      ||||||||||  |||| || |||||||| | ||  | ||||||||||| || |||||||||||||||    
T  25080365 tttggtgctcgaaccaatctagaatcc------cctctgttccagttggcaatcaaatattcgcgcttctagcctcatgtagtttctgttagtttagcat 25080272  T
Q  252 aagatatat 260  Q
    |||| ||||    
T  25080271 aagaaatat 25080263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #65
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 500
Target Start/End: Complemental strand, 26625888 - 26625851
Alignment:
Q  463 aaggtgacattcattaaggcactcgggaagaattttga 500  Q
    ||||||||||||||||||||| || |||||||||||||    
T  26625888 aaggtgacattcattaaggcattcaggaagaattttga 26625851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #66
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 500
Target Start/End: Complemental strand, 26731865 - 26731828
Alignment:
Q  463 aaggtgacattcattaaggcactcgggaagaattttga 500  Q
    ||||||||||||||||||||| || |||||||||||||    
T  26731865 aaggtgacattcattaaggcattcaggaagaattttga 26731828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #67
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 26059001 - 26058945
Alignment:
Q  124 aaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatccta 180  Q
    ||||||||||||||||   | ||||||||||| ||||| |||||||| |||||||||    
T  26059001 aaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatcaggaatccta 26058945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #68
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 26078971 - 26078915
Alignment:
Q  124 aaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatccta 180  Q
    ||||||||||||||||   | ||||||||||| ||||| |||||||| |||||||||    
T  26078971 aaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatcaggaatccta 26078915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 81 - 431
Target Start/End: Original strand, 265354 - 265706
Alignment:
Q  81 cggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatccta 180  Q
    |||||||||||||||| |||| | |||||||||||||||||  ||||||||||||||||     ||| ||||||| ||||| ||||||||||| ||||      
T  265354 cggaagaataataataaaagtaacagaagggatctttttacgaaaccagaaagaaattgtgtttcccttgctttggtgctcaaaccaatctggtatcc-- 265451  T
Q  181 atcacctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagtttagc----ata---agatatatattacacattgtt 273  Q
        |||||||||||||||||||| | | ||  ||||| | ||| ||||||| || |||||||||||      |||   | ||||| |||||||||| |     
T  265452 ----cctctgttccgtttgggaaatacaaataagtgcatcgagcttcatgtagtttctgttagtttatatgaaatacaaatatatacattacacattatc 265547  T
Q  274 gattatatatgaa-atactacatatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgattt 372  Q
     | |||||||  | |||  | || || ||||||| ||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||    
T  265548 aaatatatatatatataaaagatgtctaatactagtgcaataaaaaacaacaacaaacctgactcaataacattcttttacttgaggaactcaatgagtt 265647  T
Q  373 acatttgaatgcttcaagatatttgagattcggtggaaaccctctaatttcctcaagat 431  Q
     ||||   | ||   ||| | ||| ||||| ||||||| ||||||||||||||||||||    
T  265648 gcattcatacgcaaaaagctctttaagatttggtggaatccctctaatttcctcaagat 265706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 376
Target Start/End: Original strand, 28124753 - 28124944
Alignment:
Q  180 aatcacctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagtttagcataagatata-tattacacattgttgatta 278  Q
    |||| |||| |||||| |||| |||||||| |   |||| ||||||||| ||| || |||||||||| |||||| ||||| |||||| |  ||  |||||    
T  28124753 aatcccctcagttccggttggcaaacaaatctcaatgcatccagcctcaagtagtttctgttagtttggcataaaatataatattacgcgatg--gatta 28124850  T
Q  279 tatatgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttacat 376  Q
    |||||||||  ||  ||||||||||||| ||||||||||   ||||||||||||| ||||| | ||||||||||| ||||||| | ||||||| ||||    
T  28124851 tatatgaaac-ctgtatatcaaatactagtgcaagaaaa---aacaacaaacctggctcaatagcattcttctacatgaggaagttaatgattcacat 28124944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 180 - 376
Target Start/End: Original strand, 28129784 - 28129975
Alignment:
Q  180 aatcacctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagtttagcataagatata-tattacacattgttgatta 278  Q
    |||| |||| |||||| |||| |||||||| |   |||| ||||||||| ||| || |||||||||| |||||| ||||| |||||| |  ||  |||||    
T  28129784 aatcccctcagttccggttggcaaacaaatctcaatgcatccagcctcaagtagtttctgttagtttggcataaaatataatattacgcgatg--gatta 28129881  T
Q  279 tatatgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttacat 376  Q
     ||| ||||  ||| |||||||||| || ||||||||||||||   ||||||||||||||| | ||||||||||| ||||||| | ||||||| ||||    
T  28129882 catacgaaac-ctatatatcaaatattagtgcaagaaaaaaca---acaaacctgactcaatagcattcttctacatgaggaagttaatgattcacat 28129975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 93 - 179
Target Start/End: Complemental strand, 26139107 - 26139021
Alignment:
Q  93 aatagaagttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcct 179  Q
    ||||||| ||||||||||||| |||||||| ||||||||||||||||     |||| |  ||| |||||||||||||||||||||||    
T  26139107 aatagaacttatagaagggatttttttacaaaaccagaaagaaattgtctgccccccggattggtgctcgaaccaatctggaatcct 26139021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 503
Target Start/End: Complemental strand, 26138758 - 26138716
Alignment:
Q  461 ataaggtgacattcattaaggcactcgggaagaattttgaaat 503  Q
    |||||||||||||||||||||||||| ||||||||||| ||||    
T  26138758 ataaggtgacattcattaaggcactcaggaagaattttaaaat 26138716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 80 - 556
Target Start/End: Original strand, 1735 - 2188
Alignment:
Q  80 ccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcct 179  Q
    |||||| || |||||||||| |  ||||||||||||||||||  ||||||||||||||||   | ||||||||||| ||||||||||||||||||||||     
T  1735 ccggaaaaagaataatagaaatattagaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatcc- 1833  T
Q  180 aatcacctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagtttagcataagatatatattacacattgttgattat 279  Q
     |||||     |   ||||||||||| || |    |||| |||||||||||||  | |||||||||||| ||||||||| |     ||||| | |||| |    
T  1834 catcac-----tgaagtttgggaaacgaaaaagaatgcatccagcctcatgtagcttctgttagtttagaataagatatgt----tacattatcgattgt 1924  T
Q  280 atatgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttacatttg 379  Q
    ||||| ||||||| |          |||||||||| ||   ||||||||||||||||||| | ||||||||||||||| |||||||||||||| |||       
T  1925 atatgtaatactata----------tattgcaagataa---aacaacaaacctgactcaatagcattcttctacttgaagaactcaatgatttgcatccc 2011  T
Q  380 aatgcttcaagatatttgagattcggtggaaaccctctaatttcctcaagatgctcgttgtaattcaataggagggtcctcataaggtgacattcattaa 479  Q
    | |||   |||   ||  ||||| ||||||| ||||||||||||||| |||  || |  || || |||||  ||| |  | | ||||||||||||| |||    
T  2012 attgcagaaagcatttcaagatttggtggaatccctctaatttcctccagagacttgcagttatccaatataaggatattaagaaggtgacattcactaa 2111  T
Q  480 ggcactcgggaagaattttgaaattgccataggataagtctagtcgtttcacattaacacacgacttgagaactatt 556  Q
    ||||||| |||| || ||||||||||  ||| |||||||||||   | |||||||||||||| ||||||||| ||||    
T  2112 ggcactcaggaataagtttgaaattgttatatgataagtctagagatgtcacattaacacaccacttgagaaatatt 2188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 80 - 372
Target Start/End: Original strand, 10701 - 10967
Alignment:
Q  80 ccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcct 179  Q
    |||||| || |||||||||| |  ||||||||||||||||||  ||||||||||||||||   | ||||||||||| ||||||||||||||||||||||     
T  10701 ccggaaaaagaataatagaaatattagaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatcc- 10799  T
Q  180 aatcacctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagtttagcataagatatatattacacattgttgattat 279  Q
     |||||     |   |||||||||||||||||   |||| |||||||||| ||  | |||||||||||| ||||||||| |     ||||| | |||| |    
T  10800 catcac-----tgaagtttgggaaacaaatat---tgcatccagcctcatttagcttctgttagtttagaataagatatgt----tacattatcgattgt 10887  T
Q  280 atatgaaatactacatatcaaatactattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgattt 372  Q
    ||||| ||||||| |          |||||||||| ||   ||||||||||||||||||| | |||| |||||||||||||||||||||||||    
T  10888 atatgtaatactata----------tattgcaagataa---aacaacaaacctgactcaatagcatttttctacttgaggaactcaatgattt 10967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 321 - 377
Target Start/End: Complemental strand, 22024174 - 22024118
Alignment:
Q  321 aacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttacatt 377  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  22024174 aacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttgcatt 22024118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 463 - 522
Target Start/End: Complemental strand, 22024032 - 22023973
Alignment:
Q  463 aaggtgacattcattaaggcactcgggaagaattttgaaattgccataggataagtctag 522  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||  |||||||||||    
T  22024032 aaggtgacattcattaaggcactcgggaagaattttgaaattgttattcgataagtctag 22023973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 29271099 - 29271154
Alignment:
Q  316 aaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatt 371  Q
    ||||||||||| |||||||||||  ||||||||| |||||||||||||||||||||    
T  29271099 aaaacaacaactaacctgactcattaacattcttttacttgaggaactcaatgatt 29271154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 468 - 556
Target Start/End: Original strand, 29271251 - 29271339
Alignment:
Q  468 gacattcattaaggcactcgggaagaattttgaaattgccataggataagtctagtcgtttcacattaacacacgacttgagaactatt 556  Q
    |||||||| |||||||||| |||||||||||||||| |  | | |||||||||||   | |||||||||||||| ||||||||| ||||    
T  29271251 gacattcactaaggcactcaggaagaattttgaaatagttaaatgataagtctagatatgtcacattaacacaccacttgagaagtatt 29271339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 29270863 - 29270962
Alignment:
Q  79 tccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcc 178  Q
    |||||||| |||| |||| |||| ||||||||||| | |||||  ||||||||||||||||     ||||||||||| || |||||||||||||| ||||    
T  29270863 tccggaagcataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgttcgaaccaatctggtatcc 29270962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 10624 - 10550
Alignment:
Q  104 tagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcc 178  Q
    ||||||||||||||||||  ||||||||||||||||   | ||||||||||| ||||||||||||||||||||||    
T  10624 tagaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatcc 10550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 10433 - 10382
Alignment:
Q  321 aacaacaaacctgactcaacaacattcttctacttgaggaactcaatgattt 372  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  10433 aacaacaaacctgactcaatagcattcttctacttgaggaactcaatgattt 10382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 79 - 247
Target Start/End: Complemental strand, 16418 - 16256
Alignment:
Q  79 tccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcc 178  Q
    ||||||| |||||| ||| |||||||||||||||| | |||||  ||||||||||||||||     ||||||||||| ||||| ||||||||||| ||||    
T  16418 tccggaaaaataattatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatcc 16319  T
Q  179 taatcacctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagttta 247  Q
          | |||||||||||||||||   ||||| |||||| ||||||| ||||| || ||||| |||||    
T  16318 ------catctgttccgtttgggaatttaatataggtgcatccagcctgatgtagtttctgtttgttta 16256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 465 - 553
Target Start/End: Complemental strand, 16036 - 15948
Alignment:
Q  465 ggtgacattcattaaggcactcgggaagaattttgaaattgccataggataagtctagtcgtttcacattaacacacgacttgagaact 553  Q
    ||||||||||| |||||||||| ||||||||||||||||||| |||  |||||| |||   | ||| |||||||||| |||||||||||    
T  16036 ggtgacattcactaaggcactcaggaagaattttgaaattgctatataataagtttagagatgtcatattaacacaccacttgagaact 15948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 429
Target Start/End: Complemental strand, 16185 - 16072
Alignment:
Q  316 aaaacaacaacaaacctgactcaacaacattcttctacttgaggaactcaatgatttacatttgaatgcttcaagatatttgagattcggtggaaaccct 415  Q
    ||||||||||| |||||||||||  || |||||| ||||||||||||||||||||| ||||     ||| | ||  | ||| ||||| ||||||| ||||    
T  16185 aaaacaacaactaacctgactcattaatattcttttacttgaggaactcaatgattgacatccttgtgcattaatctcttttagatttggtggaatccct 16086  T
Q  416 ctaatttcctcaag 429  Q
    ||||||||||||||    
T  16085 ctaatttcctcaag 16072  T

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Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 87 - 178
Target Start/End: Original strand, 17990171 - 17990262
Alignment:
Q  87 aataataatagaagttatagaagggatctttttacagaaccagaaagaaattgatccacccctgctttgatgctcgaaccaatctggaatcc 178  Q
    |||||| |||||||||||||||||||| | |||||  ||||||||||||||||     ||||||||||| ||||| ||||||||||||||||    
T  17990171 aataatgatagaagttatagaagggatttctttacgaaaccagaaagaaattgtgtgccccctgctttggtgctcaaaccaatctggaatcc 17990262  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 372
Target Start/End: Original strand, 17990414 - 17990463
Alignment:
Q  323 caacaaacctgactcaacaacattcttctacttgaggaactcaatgattt 372  Q
    |||||||||||||| |  || |||||||||||||||||| ||||||||||    
T  17990414 caacaaacctgactaagtaaaattcttctacttgaggaaatcaatgattt 17990463  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 552
Target Start/End: Original strand, 17990554 - 17990643
Alignment:
Q  463 aaggtgacattcattaaggcactcgggaagaattttgaaattgccataggataagtctagtcgtttcacattaacacacgacttgagaac 552  Q
    |||||||||||| |||||||||| ||| | | |||||||||||   |  || ||||||||  ||||||||||| ||||| ||||||||||    
T  17990554 aaggtgacattcgttaaggcacttggggaaatttttgaaattgttcttcgacaagtctagatgtttcacattagcacaccacttgagaac 17990643  T

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