View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7332_low_11 (Length: 552)
Name: NF7332_low_11
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 1618898 - 1619295
Alignment:
| Q |
1 |
gaccagacagactatattctaattagatgttaacaggtaaattattcaccaaatatgaacacttctatcatatcaaccaaaacagttttaaaaatctcat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1618898 |
gaccagacagactatattctaattagatgttaataggtaaattattcaccaaatatgaacacttctatcatatcaaccaaaacagttttaaaaagctcat |
1618997 |
T |
|
| Q |
101 |
caaaaaatagtctcttatttgttattttcaaataagtaaaaccaatcaatgaaatagatattcaatgaaacaatgaaaattattactttcattttcacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1618998 |
caaaaaatagtctcttatttgttattttcaaataagtaaaaccaatcaatgatatagatattcaatgacacaatgaaaattattactttcattttcacat |
1619097 |
T |
|
| Q |
201 |
attgaaaatccaaacacatagcatcagcaaannnnnnnnnnnnngcaatcccttcaccaccaaacaaaatttccaaaacatgcataccagaaaactataa |
300 |
Q |
| |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1619098 |
attgaaaatccaaacacatagcatcagc-aatttttatttttttgcaatcccttcaccaccaaacaaaatttccaaaacatgcataccagaaaactataa |
1619196 |
T |
|
| Q |
301 |
atcatgatactcaaactgaacaaaccacaccataatcaaactaaacatataattttcaataaagcagacaccaaatgaaaaaa-ccaacatacatgcat |
398 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
1619197 |
atcatgatactcaaactgaacaaaccacaccataatcaaactaaacatataatttccaataaagcagacaccaaataaaaaaatccaacatacatgcat |
1619295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 32573597 - 32573992
Alignment:
| Q |
1 |
gaccagacagactatattctaattagatgttaacaggtaaattattcaccaaatatgaacacttctatcatatcaaccaaaacagttttaaaaatctcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32573597 |
gaccagacagactatattctaattagatgttaataggtaaattattcaccaaatatgaacacttctatcatatcaaccaaaacagttttaaaaagctcat |
32573696 |
T |
|
| Q |
101 |
caaaaaatagtctcttatttgttattttcaaataagtaaaaccaatcaatgaaatagatattcaatgaaacaatgaaaattattactttcattttcacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32573697 |
aaaaaaatagtctcttatttgttattttcaaataagtaaaaccaatctatgatatagatattcaatgacacaatgaaaattattactttcattttcacat |
32573796 |
T |
|
| Q |
201 |
attgaaaatccaaacacatagcatcagcaaannnnnnnnnnnnngcaatcccttcaccaccaaacaaaatttccaaaacatgcataccagaaaactataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32573797 |
attgaaaatccaaacacatagcatcagcaa---tttttttttttgcaatcccttcaccaccaaacaaaatttccaaaacatgcataccagaaaactataa |
32573893 |
T |
|
| Q |
301 |
atcatgatactcaaactgaacaaaccacaccataatcaaactaaacatataattttcaataaagcagacaccaaat-gaaaaaaccaacatacatgcat |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
32573894 |
atcatgatactcaaactgaacaaaccacaccataatcaaactaaatatataatttccaataaagcagacaccaaataaaaaaaaccaacatacatgcat |
32573992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 32781687 - 32781491
Alignment:
| Q |
1 |
gaccagacagactatattctaattagatgttaacaggtaaattattcaccaaatatgaacacttctatcatatcaaccaaaacagttttaaaaatctcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| || || ||||| |
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| T |
32781687 |
gaccagacagactatattctaattagatgttaacaggtaaattattcaccaaatatgaacaattctatcatatcaaccacaagagtctttaattactcat |
32781588 |
T |
|
| Q |
101 |
caaaaaatagtctcttatttgttattttcaaataagtaaaaccaatcaatgaaatagatattcaatgaaacaatgaaaattattactttcattttcac |
198 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
32781587 |
caaaaaatagtctcttagttgttattttcaaataagaaaaaccaatcaatgaaatagatattcaatgacacaatgaaaattattac-ttcattttcac |
32781491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 13206068 - 13206000
Alignment:
| Q |
332 |
ataatcaaactaaacatataattttcaat--aaagcagacaccaaatgaaaaaaccaacatacatgcat |
398 |
Q |
| |
|
|||||||||||||||||||||||| | || ||| || |||||||| ||||||||||||||||||||| |
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|
| T |
13206068 |
ataatcaaactaaacatataatttcctataaaaaacaaacaccaaagaaaaaaaccaacatacatgcat |
13206000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 28284883 - 28284828
Alignment:
| Q |
16 |
attctaattagatgttaacaggtaaattattcaccaaatatgaacacttctatcata |
72 |
Q |
| |
|
||||| ||||||||||| |||||||||| ||| |||||||||| |||||||||||| |
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|
| T |
28284883 |
attctgattagatgttag-aggtaaattaatcatcaaatatgaatacttctatcata |
28284828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 45337462 - 45337558
Alignment:
| Q |
102 |
aaaaaatagtctcttatttgttattttcaaataagtaaaaccaatcaatgaaatagatattcaatgaaacaatgaaaattattactttcattttcac |
198 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||| || | ||||||||||||||||||||||||||| |
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| T |
45337462 |
aaaaaatagtctcttaattgttattttcaaataagaaaaaccaatcaatgagatagatattcagcgacaaaatgaaaattattactttcattttcac |
45337558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 45337266 - 45337327
Alignment:
| Q |
11 |
actatattctaattagatgttaacaggtaaattattcaccaaatatgaacacttctatcata |
72 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
45337266 |
actatattctaattagatgttaagaggtaaatcattcaccaaatatgaacacttctatcata |
45337327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 332 - 398
Target Start/End: Original strand, 7986598 - 7986664
Alignment:
| Q |
332 |
ataatcaaactaaacatataattttcaataaagcagacaccaaatgaaaaaaccaacatacatgcat |
398 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| || |||||||| ||||||||||||||||||||| |
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|
| T |
7986598 |
ataatcaaactaaacatataatttcctataaaacaaacaccaaagaaaaaaaccaacatacatgcat |
7986664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 327 - 389
Target Start/End: Complemental strand, 37220801 - 37220739
Alignment:
| Q |
327 |
acaccataatcaaactaaacatataattttcaataaagcagacaccaaatgaaaaaaccaaca |
389 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||| || ||||||||| | |||||||||| |
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|
| T |
37220801 |
acaccataatcaaactaaacataaaattttctataaaacatacaccaaataagaaaaccaaca |
37220739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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