View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_12 (Length: 522)
Name: NF7332_low_12
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 33 - 504
Target Start/End: Complemental strand, 38898749 - 38898268
Alignment:
| Q |
33 |
gagatgaaccatgggaaaatatgattaaattaaatattaaataca----------cgtgttgttggggagaaagatagggtgccgagagcaacaacgagt |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38898749 |
gagatgaaccatgggaaaatatgattaaattaaatattaaatacatgtataagtacgtgttgttggggagaaagatagggtgccgagagcaacaacgagt |
38898650 |
T |
|
| Q |
123 |
taatgatctaagactacaaaaaattaggacaccacatctccactcaaattcttatagcattggccgttgggtatatataagtatctcacttgtannnnnn |
222 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
38898649 |
taatgatttaagactataaaaaattaggacaccacatctccactcaaattcttatagtattggccgttgggtatatataagtatttcacttgtatttttt |
38898550 |
T |
|
| Q |
223 |
nnnnngaaaaaactaaactaaccccctcaaattggcacagggaatcaaacctgagacctggatgtatgtggattacgagtatctcacttgtatgttactc |
322 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38898549 |
tttt-gaagaaactaaactaaccccctcaaattggcacagggaatcgaacctgagacctagatgtatgtggattacgagtatctcacttgtatgttactc |
38898451 |
T |
|
| Q |
323 |
gacatccacnnnnnnn-atcaaatatgaaatttctaactcacagttgacatgccaataatctcctcatgaatataagtctattcatcttggtatacttcc |
421 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
38898450 |
gacatccacttttttttatcaaatatgaaatttctaactcacagttgtcatgtcaataatctcctcatgaatataagtctaatcatcttggcatacttcc |
38898351 |
T |
|
| Q |
422 |
aaatttttcatcaacatacatttgcaccgttgttaatcaccacattgtgagaaagactttcgatacaaggagttgatcacctt |
504 |
Q |
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| T |
38898350 |
aaatttttcatcaacatacatttgcaccgttgttaatcaccacattgtgagaaagactttcgatacaaggagttggtcacctt |
38898268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 339 - 500
Target Start/End: Original strand, 38647016 - 38647178
Alignment:
| Q |
339 |
atcaaatatgaaatttctaactcacagttgacatgccaataatctcctcatgaa-tataagtctattcatcttggtatacttccaaatttttcatcaaca |
437 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||| ||||||||| |||| || ||||||| ||| | ||||| ||| ||||||||| ||| |
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| T |
38647016 |
atcaaatatggaatttctaactcacagttgacacaccaacaatctcctcttgaagcatgcgtctatttatccgaggttactttcaattttttcatccaca |
38647115 |
T |
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| Q |
438 |
tacatttgcaccgttgttaatcaccacattgtgagaaagactttcgatacaaggagttgatca |
500 |
Q |
| |
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|||| ||||| ||||| | | ||||| ||| | | |||||| ||||||| ||||| ||||||| |
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|
| T |
38647116 |
tacacttgcatcgttggtgaccaccatattatcaaaaagacgttcgatataaggatttgatca |
38647178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 34041556 - 34041605
Alignment:
| Q |
235 |
ctaaactaaccccctcaaattggcac---agggaatcaaacctgagacct |
281 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34041556 |
ctaaactaaccccctcaaattggcaccagagggaatcaaacctgagacct |
34041605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 4249285 - 4249236
Alignment:
| Q |
235 |
ctaaactaaccccctcaaattggcac---agggaatcaaacctgagacct |
281 |
Q |
| |
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|||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
4249285 |
ctaaactaaccccctcaaattggcaccagagagaatcaaacctgagacct |
4249236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 38869876 - 38869827
Alignment:
| Q |
235 |
ctaaactaaccccctcaaattggcac---agggaatcaaacctgagacct |
281 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
38869876 |
ctaaactaaccccctcaaattggcaccagagggaatcgaacctgagacct |
38869827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 37109316 - 37109368
Alignment:
| Q |
232 |
aaactaaactaaccccctcaaattggcac---agggaatcaaacctgagacct |
281 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| |||||||||||| |
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| T |
37109316 |
aaactaaactaaccccctcaaattggcaccagagagaatcgaacctgagacct |
37109368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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