View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7332_low_14 (Length: 487)
Name: NF7332_low_14
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 163; Significance: 7e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 303 - 469
Target Start/End: Original strand, 41608861 - 41609027
Alignment:
| Q |
303 |
cacaaaattgtcatcaaagttataataaaatgcatgtacaaatatcattactcattttcaaaaggccccgacttgtaatcaaatcacctgatgatgaccc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41608861 |
cacaaaattgtcatcaaagttataataaaatgcatgtacaaatatcattactcattttcaaaaggccccgacttgtaatcaaatgacctgatgatgaccc |
41608960 |
T |
|
| Q |
403 |
acccaaaagcttgtttcagtttccaactatgtcatatttagatcgttcttgcaagaccctagctagt |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41608961 |
acccaaaagcttgtttcagtttccaactatgtcatatttagatcgttcttgcaagaccctagctagt |
41609027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 41608600 - 41608739
Alignment:
| Q |
16 |
atctagtgggatcaaacttaatgaagagcgtaattttgtaaacataactagcaacatgaccaaaattaaaataaaagcaaacaactatcatctgaatcta |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41608600 |
atctagtgggatcaaacttgatgaagagcgtaattttgtaaacataactagcaacatgaccaaaattaaaataaaagcaaacaactatcatctgaatcta |
41608699 |
T |
|
| Q |
116 |
taattaggaagacttggtatatttttaaagagaaatgata |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41608700 |
taattaggaagacttggtatatttttaaagagaaatgata |
41608739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 351
Target Start/End: Original strand, 10385547 - 10385593
Alignment:
| Q |
305 |
caaaattgtcatcaaagttataataaaatgcatgtacaaatatcatt |
351 |
Q |
| |
|
||||||||||| ||||||||| || ||||| |||||||||||||||| |
|
|
| T |
10385547 |
caaaattgtcaccaaagttatcattaaatggatgtacaaatatcatt |
10385593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 38504302 - 38504355
Alignment:
| Q |
304 |
acaaaattgtcatcaaagttataataaaatgcatgtacaaatatcattactcat |
357 |
Q |
| |
|
|||||||||||| |||| || |||| ||||| |||||||||||||||| ||||| |
|
|
| T |
38504302 |
acaaaattgtcaccaaaattgtaattaaatggatgtacaaatatcattgctcat |
38504355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 23183656 - 23183611
Alignment:
| Q |
306 |
aaaattgtcatcaaagttataataaaatgcatgtacaaatatcatt |
351 |
Q |
| |
|
|||||||||| ||||||||| || ||||| |||||||||||||||| |
|
|
| T |
23183656 |
aaaattgtcaccaaagttatcattaaatggatgtacaaatatcatt |
23183611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 16645605 - 16645553
Alignment:
| Q |
304 |
acaaaattgtcatcaaagttataataaaatgcatgtacaaatatcattactca |
356 |
Q |
| |
|
|||||||||||| ||||||||| || ||||| ||| |||||||||||| |||| |
|
|
| T |
16645605 |
acaaaattgtcaacaaagttatcattaaatgaatggacaaatatcattgctca |
16645553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 17619966 - 17619914
Alignment:
| Q |
304 |
acaaaattgtcatcaaagttataataaaatgcatgtacaaatatcattactca |
356 |
Q |
| |
|
|||||||||||| ||||||||| || ||||| ||| |||||||||||| |||| |
|
|
| T |
17619966 |
acaaaattgtcaacaaagttatcattaaatgaatggacaaatatcattgctca |
17619914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University