View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_16 (Length: 461)
Name: NF7332_low_16
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_16 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 14)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 438
Target Start/End: Complemental strand, 13167890 - 13167468
Alignment:
| Q |
16 |
gacatcatgtggattgatggatcgaaacgcactaaccaacctaagaaactggtttttgcaaaacttgttatatagactctttcaccagaattattgtcca |
115 |
Q |
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||||||||||||||| ||||||||||||| |||| |||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
13167890 |
gacatcatgtggattaatggatcgaaacgacgtaacaaacctatgaaactggtttttgtgaaacttgttatatagactttttcaccagaattattgtcca |
13167791 |
T |
|
| Q |
116 |
agaagcactcacatccaaaatctacaccaaatcccatatggcctcgagaaagaaccacgtagtaggcaaaaccaaacaaattagaaggaagctcaagagt |
215 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13167790 |
agaagcactcacatccaaaatctacaccatatcccatacggccttgagaaagaaccaagtagtaggcaaaacccgacaaattagaaggaagctcaagagt |
13167691 |
T |
|
| Q |
216 |
gacagaaacttgtgtagaagagtaatggaaccaattttccatgccaggcatagcaggtaagaagtgccaggcatggccatgtacaaatgcattttctaaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||||| || |
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| T |
13167690 |
gacagaaacttgtgtagaagagtaatggaaccaattttccatgccaggcatagcaggtaagaagtgccacgcactgtcacatacaaatgcattttctgaa |
13167591 |
T |
|
| Q |
316 |
aatacttttgctacaagttcaatcttttccatagcatcatttaaaactgtttggtatgaatgtggatccaattttatgcagttaaggagcagaaaacagc |
415 |
Q |
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| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13167590 |
actacttttgctacaagttcaatcctttccatagcatcgtttaaaactgtttggtatgaatgtggatccaattttatgcagttaaggagcagaaaaccac |
13167491 |
T |
|
| Q |
416 |
agctcggtttctcagatggttca |
438 |
Q |
| |
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| || |||||||||| ||||||| |
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| T |
13167490 |
acctaggtttctcagctggttca |
13167468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 6307687 - 6307948
Alignment:
| Q |
19 |
atcatgtggattgatggatcgaaacgcactaaccaacctaagaaactggtttttgcaaaacttgttatatagactctttcaccagaattattgtccaaga |
118 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||| | | | ||| |||||||||||||||| ||||||||| ||| |||||||||| |
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| T |
6307687 |
atcatgtggattgatggatcgaaacgcaataaccaactgaagaaatttgctcttgtgaaacttgttatatagattctttcacctgaactattgtccaaat |
6307786 |
T |
|
| Q |
119 |
agcactcacatccaaaatctacaccaaatcccatatggcctcgagaaagaaccacgtagtaggcaaaaccaaacaaattagaaggaagctcaagagtgac |
218 |
Q |
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||||||||||||||||||| ||| || |||||||||||||| |||||||||||| |||||| | ||| || |||||||| ||||||||||||||||| |
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| T |
6307787 |
agcactcacatccaaaatccacatcatatcccatatggccttgagaaagaaccaagtagtacgaaaatccctgtaaattagacggaagctcaagagtgac |
6307886 |
T |
|
| Q |
219 |
agaaacttgtgtagaagagtaatggaaccaattttccatgccaggcatagcaggtaagaagt |
280 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6307887 |
acaaacttgtgtagaagagtaatggaaccaattttccatgccaggcatagcaggtaaaaagt |
6307948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 76 - 280
Target Start/End: Complemental strand, 32635968 - 32635764
Alignment:
| Q |
76 |
aaacttgttatatagactctttcaccagaattattgtccaagaagcactcacatccaaaatctacaccaaatcccatatggcctcgagaaagaaccacgt |
175 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||| || |
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| T |
32635968 |
aaacttgttatatagatcctttcacctgaactattgtccaagtagcactcacatccaaaatctacaccatatcccatatggcctggagaaagaaccaagt |
32635869 |
T |
|
| Q |
176 |
agtaggcaaaaccaaacaaattagaaggaagctcaagagtgacagaaacttgtgtagaagagtaatggaaccaattttccatgccaggcatagcaggtaa |
275 |
Q |
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||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||| || ||| ||||||| ||| |||||||||||||||||||| |
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| T |
32635868 |
agtaggcaaaacccaacaaattaggaggaagctcaagagtaacagaaacttgtgtagaagggtgatgaaaccaatattctatgccaggcatagcaggtaa |
32635769 |
T |
|
| Q |
276 |
gaagt |
280 |
Q |
| |
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||||| |
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| T |
32635768 |
gaagt |
32635764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 76 - 274
Target Start/End: Original strand, 5604742 - 5604940
Alignment:
| Q |
76 |
aaacttgttatatagactctttcaccagaattattgtccaagaagcactcacatccaaaatctacaccaaatcccatatggcctcgagaaagaaccacgt |
175 |
Q |
| |
|
|||||||||||| | | ||||||||| ||| |||| |||||| ||||||||||||||| ||||| |||| |||||||||||| |||||||||| |||| |
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| T |
5604742 |
aaacttgttatacatattctttcacctgaactattttccaagttgcactcacatccaaatcctacatcaaaacccatatggccttgagaaagaacaacgt |
5604841 |
T |
|
| Q |
176 |
agtaggcaaaaccaaacaaattagaaggaagctcaagagtgacagaaacttgtgtagaagagtaatggaaccaattttccatgccaggcatagcaggta |
274 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5604842 |
agtaggcaaaacccaacaaattagaaggaagctcaagagtcacagaaacttcagtagaagggtaatggaaccaattttccatgccaggcatagcaggta |
5604940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 76 - 274
Target Start/End: Complemental strand, 5630628 - 5630430
Alignment:
| Q |
76 |
aaacttgttatatagactctttcaccagaattattgtccaagaagcactcacatccaaaatctacaccaaatcccatatggcctcgagaaagaaccacgt |
175 |
Q |
| |
|
|||||||||||| | | ||||||||| ||| |||| |||||| ||||||||||||||| ||||| |||| |||||||||||| |||||||||| |||| |
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| T |
5630628 |
aaacttgttatacatattctttcacctgaactattttccaagttgcactcacatccaaatcctacatcaaaacccatatggccttgagaaagaacaacgt |
5630529 |
T |
|
| Q |
176 |
agtaggcaaaaccaaacaaattagaaggaagctcaagagtgacagaaacttgtgtagaagagtaatggaaccaattttccatgccaggcatagcaggta |
274 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5630528 |
agtaggcaaaacccaacaaattagaaggaagctcaagagtcacagaaacttcagtagaagggtaatggaaccaattttccatgccaggcatagcaggta |
5630430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 76 - 280
Target Start/End: Complemental strand, 5648121 - 5647917
Alignment:
| Q |
76 |
aaacttgttatatagactctttcaccagaattattgtccaagaagcactcacatccaaaatctacaccaaatcccatatggcctcgagaaagaaccacgt |
175 |
Q |
| |
|
|||||||||||| ||| |||||||| ||| ||||||||||| |||| | |||||||||| |||||||||| |||| |||| |||||||||||| || |
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| T |
5648121 |
aaacttgttatacagatcctttcacctgaactattgtccaagtagcatttacatccaaaacctacaccaaaatccatgatgcctggagaaagaaccaagt |
5648022 |
T |
|
| Q |
176 |
agtaggcaaaaccaaacaaattagaaggaagctcaagagtgacagaaacttgtgtagaagagtaatggaaccaattttccatgccaggcatagcaggtaa |
275 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
5648021 |
agtatgcaaaacccaacaaattagaaggaagctcaagagtgtcagaaacttgtgtagaagagtaatggaaccaattttccgttccaggcatagcaggtaa |
5647922 |
T |
|
| Q |
276 |
gaagt |
280 |
Q |
| |
|
||||| |
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|
| T |
5647921 |
gaagt |
5647917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 93 - 280
Target Start/End: Complemental strand, 5554085 - 5553898
Alignment:
| Q |
93 |
tctttcaccagaattattgtccaagaagcactcacatccaaaatctacaccaaatcccatatggcctcgagaaagaaccacgtagtaggcaaaaccaaac |
192 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||||| |||| ||| ||| | || ||| ||| | ||| | |||||||||| ||||||||||||||| ||| |
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|
| T |
5554085 |
tctttcacctgaactattgtccaagtagcactcatatccgaaacctatatcagatcttatacgaccttgtgaaagaaccaagtagtaggcaaaacccaac |
5553986 |
T |
|
| Q |
193 |
aaattagaaggaagctcaagagtgacagaaacttgtgtagaagagtaatggaaccaattttccatgccaggcatagcaggtaagaagt |
280 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5553985 |
aaattagaaggaagctcaagagtgacacaaacttcagtagaagagtaatggaaccaattttccatgccaggcatagctggtaagaagt |
5553898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 323 - 406
Target Start/End: Original strand, 5604986 - 5605069
Alignment:
| Q |
323 |
ttgctacaagttcaatcttttccatagcatcatttaaaactgtttggtatgaatgtggatccaattttatgcagttaaggagca |
406 |
Q |
| |
|
||||| ||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||| || |||||||||||||| |
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|
| T |
5604986 |
ttgctccaagttcaatcccacccatagaatctttcaaaactgtttggtatgaatgtggatccaattctacgcagttaaggagca |
5605069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 323 - 406
Target Start/End: Complemental strand, 5630384 - 5630301
Alignment:
| Q |
323 |
ttgctacaagttcaatcttttccatagcatcatttaaaactgtttggtatgaatgtggatccaattttatgcagttaaggagca |
406 |
Q |
| |
|
||||| ||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||| || |||||||||||||| |
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|
| T |
5630384 |
ttgctccaagttcaatcccacccatagaatctttcaaaactgtttggtatgaatgtggatccaattctacgcagttaaggagca |
5630301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 405
Target Start/End: Complemental strand, 14407111 - 14407033
Alignment:
| Q |
327 |
tacaagttcaatcttttccatagcatcatttaaaactgtttggtatgaatgtggatccaattttatgcagttaaggagc |
405 |
Q |
| |
|
||||||||||||| ||||||||||| || |||||||||||||||||||||| ||||| ||| |||||||||||||| |
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|
| T |
14407111 |
tacaagttcaatcccatccatagcatctttcaaaactgtttggtatgaatgtgaatccatgtttttgcagttaaggagc |
14407033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 404
Target Start/End: Original strand, 6307999 - 6308060
Alignment:
| Q |
343 |
tccatagcatcatttaaaactgtttggtatgaatgtggatccaattttatgcagttaaggag |
404 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| ||||| ||| ||||||||||||| |
|
|
| T |
6307999 |
tccatagcatctttcaaaactgtttggtatgaatgtggttccaaatttttgcagttaaggag |
6308060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 400
Target Start/End: Complemental strand, 5553852 - 5553775
Alignment:
| Q |
323 |
ttgctacaagttcaatcttttccatagcatcatttaaaactgtttggtatgaatgtggatccaattttatgcagttaa |
400 |
Q |
| |
|
||||| |||||||||| | |||||||||| || |||||||||||||||||||||| |||||| ||| |||||||| |
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|
| T |
5553852 |
ttgcttcaagttcaatttgaaccatagcatctttcaaaactgtttggtatgaatgtgtatccaaattttggcagttaa |
5553775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 32635670 - 32635617
Alignment:
| Q |
359 |
aaactgtttggtatgaatgtggatccaattttatgcagttaaggagcagaaaac |
412 |
Q |
| |
|
|||||||| |||||||| |||||| ||||||||||||||||| |||||||||| |
|
|
| T |
32635670 |
aaactgttcggtatgaaactggatctaattttatgcagttaagaagcagaaaac |
32635617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 389
Target Start/End: Complemental strand, 5647851 - 5647805
Alignment:
| Q |
343 |
tccatagcatcatttaaaactgtttggtatgaatgtggatccaattt |
389 |
Q |
| |
|
|||||||| || || |||||||| ||||||||||||||||||||||| |
|
|
| T |
5647851 |
tccatagcctctttcaaaactgtctggtatgaatgtggatccaattt |
5647805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 405
Target Start/End: Original strand, 11742 - 11820
Alignment:
| Q |
327 |
tacaagttcaatcttttccatagcatcatttaaaactgtttggtatgaatgtggatccaattttatgcagttaaggagc |
405 |
Q |
| |
|
||||||||||||| ||||||||||| || |||||||||||||||||||||| ||||| ||| |||||||||||||| |
|
|
| T |
11742 |
tacaagttcaatcccatccatagcatctttcaaaactgtttggtatgaatgtgaatccatgtttttgcagttaaggagc |
11820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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