View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_17 (Length: 430)
Name: NF7332_low_17
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 407
Target Start/End: Original strand, 43519752 - 43520144
Alignment:
| Q |
16 |
catatttatttgcaacaactttgatgagttctttttcactattaacaggaactttctaatgccctttgattttgctacatgttttgattgtctacttctt |
115 |
Q |
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| T |
43519752 |
catatttatttgcaacaactttgatgagttctttttcactattaacaggaactttctaatgccctttgattttgctacatgttttgattgtctacttctt |
43519851 |
T |
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| Q |
116 |
tgtaagggaacttgctttgtaacagagaggagtacaacaacattgtcnnnnnnnnn-ctctacattaagtagaacattgtttagtnnnnnnnnnnnnntc |
214 |
Q |
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| T |
43519852 |
tgtaagggaacttgctttgtaacagagaggagtacaacaacattgtcttttttttctctctacattaagtagaacattgtttagtaaaaattaaaaaatc |
43519951 |
T |
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| Q |
215 |
atgagtcattagataattaaaacttccaaaagtatgaaagtttaaattttgtcatttccccaatccaacaacttcaccttatcgtttaacaaatacaaga |
314 |
Q |
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| T |
43519952 |
atgagtcattagataattaaaacttccaaaagtatgaaagtataaattttgtcatttccccaatccaacaacttcaccttatcgtttaacaaatacaaga |
43520051 |
T |
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| Q |
315 |
attgcaaataagaaacaatcttatggaaatgaaatgaaataaagattgcatgtgtgtttattcaaaaacaatcaatctgtagaaaacaacaat |
407 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43520052 |
attgcaaatatgaaacaatcttatggaaatgaaatgaaataaagattgcatgtgtgtttattcaaaaacaatcaatctgtagaaaacaacaat |
43520144 |
T |
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