View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_18 (Length: 429)
Name: NF7332_low_18
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Complemental strand, 36468610 - 36468202
Alignment:
| Q |
17 |
aaattgtacttaattaaagctactctttggaattgcatctgttgtacttatgttcagtcaaattttgcggtactttaatccaattatttttcatatacat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36468610 |
aaattgtacttaattaaagctactctttggaattgcatctgttgtacttatgttcagtcaaattttgcggtactttaatccaattatttttcatatacat |
36468511 |
T |
|
| Q |
117 |
gtattcttatgttgcagatagctatgaactttgatcaattttatttatgtttgtagggttcttcctattgtaaaagaagataaatgcattacactagtgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36468510 |
gtattcttatgttgcagatagctatgaactttgatcaattttatttatgtttgtagggttcttcctattgtaaaagaagataaatgcattacactagtgt |
36468411 |
T |
|
| Q |
217 |
aaaatattgagaaaattttgatcaaattaatgtaaaagataaatgagtaagactcaatccatttaagtatactcataatatgtcccgatcttgtataaaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36468410 |
aaaatattgagaaaattttgatcaaattaatgtaaaagataaacgagtaagactcaatccatttaagtatactcataatatgtcccgatcttgtataaaa |
36468311 |
T |
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| Q |
317 |
tttatgaaaacgtgttacattatagaagacgaaatctgcaaggaggataaatg-nnnnnnnngaatcgggaaaatttattaagccaaggaggtgaaagaa |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36468310 |
tttatgaaaacgtgttacattatagaagacgaaatctgcaaggaggataaatgtttttttttgaatcgggaaaatttattaagccaaggaggtgaaagaa |
36468211 |
T |
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| Q |
416 |
acaccaaac |
424 |
Q |
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||||||||| |
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| T |
36468210 |
acaccaaac |
36468202 |
T |
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Back To:
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Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 21188838 - 21188924
Alignment:
| Q |
17 |
aaattgtacttaattaaagctactctttggaattgcatctgttgtacttatgttcagtcaaattttgcggtactttaatccaattat |
103 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21188838 |
aaattgtacttaatcgaagctactctttggaattgcatctgttgtacttatgttcagtcaaattttgcggtactttaatccaattat |
21188924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 421
Target Start/End: Complemental strand, 32010393 - 32010351
Alignment:
| Q |
379 |
aatcgggaaaatttattaagccaaggaggtgaaagaaacacca |
421 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
32010393 |
aatcggcaaaatttattaagccaaggaggtgaaaggaacacca |
32010351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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