View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_19 (Length: 427)
Name: NF7332_low_19
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_19 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 6317205 - 6317631
Alignment:
| Q |
1 |
taatcattaccttgctcgaatatacttggaaaatcagtcaaagtaaaatgtaaagcttgagtttcacattaccctgctagtcaaagtaaaagcagtcatt |
100 |
Q |
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| T |
6317205 |
taatcattaccttgctcgaatatacttggaaaatcagtcaaagtaaaatgtaaagcttgagtttcacattaccctgctagtcaaagtaaaagcagtcatt |
6317304 |
T |
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| Q |
101 |
gtataaagaataaaaaagtcacataccagctcagttcagactacttcatcagaagtgtcctttactatagaagtctgttaaagcaagtaatagcaaatta |
200 |
Q |
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| T |
6317305 |
gtataaagaataaaaaagccgcataccagctcagttcagactacttcatcagaagtgtcctttactatagaagtctgttaaagcaagtaatagcaaatta |
6317404 |
T |
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| Q |
201 |
ccttttacttctttcttctcttctgttttggtatttacaaacatgagtgcatgagtaatattttacaaggtttggtaaactcttgagtataacaagacca |
300 |
Q |
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| T |
6317405 |
cattttacttctttcttctcttctgttttggtatttacaaacatgagtgcataagtaatattttacaaggtttggtaaactctggagtataacaagacca |
6317504 |
T |
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| Q |
301 |
aatctacaaacttaacctataaagtgtcaaaaaaggaagtatcacaacttacgcaagagcctctggaggaagaattggtcgaaactttgtatatgacata |
400 |
Q |
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| T |
6317505 |
aatctacaaacttaacctataaagtgtcaaaaaaggaagtatcacaacttacgcaagagcctctggaggaagaattggtcgaaactttgtatatgacata |
6317604 |
T |
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| Q |
401 |
ttagacatcaaattagcccaggaaact |
427 |
Q |
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| T |
6317605 |
ttagacatcaaattagcccaggaaact |
6317631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 168 - 359
Target Start/End: Original strand, 6297585 - 6297783
Alignment:
| Q |
168 |
tagaagtctgttaaagcaagtaata-gcaaattaccttttacttctttcttctcttctgttttggtatttacaaa------catgagtgcatgagtaata |
260 |
Q |
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| T |
6297585 |
tagaagcctgttaaagcaagtaaaaagcaaattattttttacttctttcttctcctctgttttggtatttacaagactattcatcagtgcatgagtggta |
6297684 |
T |
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| Q |
261 |
ttttacaaggtttggtaaactcttgagtataacaagaccaaatctacaaacttaacctataaagtgtcaaaaaaggaagtatcacaacttacgcaagag |
359 |
Q |
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| T |
6297685 |
ttttacaagattcagtgaactcttgtatataacaagactacatctacaaacatagcctataaagtgtacaaaaaggaagtatcataacttacacaagag |
6297783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 427
Target Start/End: Original strand, 6297811 - 6297886
Alignment:
| Q |
355 |
aagagcctctggaggaagaat---tggtcgaaactttgtatatgacatattagacatcaaattagcccaggaaact |
427 |
Q |
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| T |
6297811 |
aagagcctctggaggaagaagaactggtcgcaacttggtatacgacaaattagacatcaaattagcccaggaaact |
6297886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 125 - 167
Target Start/End: Original strand, 6297523 - 6297565
Alignment:
| Q |
125 |
accagctcagttcagactacttcatcagaagtgtcctttacta |
167 |
Q |
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| T |
6297523 |
accagctctgttcagactacttcatcagaagtgtcctttacta |
6297565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 236
Target Start/End: Original strand, 55983048 - 55983076
Alignment:
| Q |
208 |
cttctttcttctcttctgttttggtattt |
236 |
Q |
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| T |
55983048 |
cttctttcttctcttctgttttggtattt |
55983076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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