View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7332_low_2 (Length: 1115)

Name: NF7332_low_2
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7332_low_2
NF7332_low_2
[»] chr3 (2 HSPs)
chr3 (529-1097)||(36745622-36746190)
chr3 (6-406)||(36745223-36745623)
[»] chr8 (23 HSPs)
chr8 (163-268)||(6274156-6274261)
chr8 (163-268)||(6288406-6288511)
chr8 (142-408)||(6450315-6450581)
chr8 (523-674)||(6273640-6273791)
chr8 (562-653)||(6449899-6449990)
chr8 (559-653)||(6456366-6456460)
chr8 (163-268)||(6331535-6331640)
chr8 (163-268)||(6351894-6351999)
chr8 (163-408)||(6456577-6456822)
chr8 (523-667)||(6330988-6331132)
chr8 (519-674)||(6320519-6320674)
chr8 (163-262)||(6390630-6390729)
chr8 (163-253)||(7458732-7458822)
chr8 (163-268)||(6321028-6321133)
chr8 (163-262)||(6409835-6409934)
chr8 (528-674)||(6287891-6288037)
chr8 (163-265)||(6362830-6362932)
chr8 (350-408)||(6262699-6262757)
chr8 (163-253)||(7471134-7471224)
chr8 (597-674)||(6390068-6390145)
chr8 (603-641)||(6409353-6409391)
chr8 (589-650)||(6262455-6262516)
chr8 (351-408)||(6409689-6409746)
[»] chr1 (2 HSPs)
chr1 (165-268)||(36925655-36925758)
chr1 (578-626)||(47127110-47127158)
[»] chr2 (4 HSPs)
chr2 (833-1056)||(42689650-42689873)
chr2 (330-408)||(42689192-42689270)
chr2 (563-621)||(42689380-42689438)
chr2 (1003-1052)||(42691979-42692028)
[»] chr5 (2 HSPs)
chr5 (586-654)||(9606050-9606118)
chr5 (142-408)||(9605567-9605833)


Alignment Details
Target: chr3 (Bit Score: 565; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 529 - 1097
Target Start/End: Original strand, 36745622 - 36746190
Alignment:
Q  529 agaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgggatgcta 628  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745622 agaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgggatgcta 36745721  T
Q  629 ttaaggcatgggtgaaagactatgttagtttgtactacaagacagacgtggccattcaaagagatgctgagctccaagagttttggaaagaagtcgtaga 728  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745722 ttaaggcatgggtgaaagactatgttagtttgtactacaagacagacgtggccattcaaagagatgctgagctccaagagttttggaaagaagtcgtaga 36745821  T
Q  729 gatcggtcatggtgatcataaaaataagccttggtggcctgagatgaattcgattaacgagttggtggaatcctgctcaataatcatatggcttgcatcc 828  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745822 gatcggtcatggtgatcataaaaataagccttggtggcctgagatgaattcgattaacgagttggtggaatcctgctcaataatcatatggcttgcatcc 36745921  T
Q  829 gctttccacgcagctgtcaatttcggacaatatccttacggtggtttaatcttgaaccgaccaactatgacaaggaggttaattcctgaaaagggaacca 928  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745922 gctttccacgcagctgtcaatttcggacaatatccttacggtggtttaatcttgaaccgaccaactatgacaaggaggttaattcctgaaaagggaacca 36746021  T
Q  929 aagaatatgaagagatggagaaagatgaccaaagggcttatttgagaacaatcacaccaaagaccgaggctctcatcgaccttacggtgatagagatatt 1028  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36746022 aagaatatgaagagatggagaaagatgaccaaagggcttatttgagaacaatcacaccaaagaccgaggctctcattgaccttacggtgatagagatatt 36746121  T
Q  1029 gtcaaggcatgcttctgatgaagtttacttagggaaaagagagaatgatgaatggacagcagatgaaaa 1097  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36746122 gtcaaggcatgcttctgatgaagtttacttagggaaaagagagaatgatgaatggacagcagatgaaaa 36746190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 6 - 406
Target Start/End: Original strand, 36745223 - 36745623
Alignment:
Q  6 gatgtcgaagaatatggagctgtgagtaaagtgctgttgcctccagaaggacatggtgttcaaagaacaatttggcaattggccaaggcgtatgtagttg 105  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745223 gatggcgaaaaatatggagctgtgagtaaagtgctgttgcctccagaaggacatggtgttcaaagaacaatttggcaattggccaaggcgtatgtagttg 36745322  T
Q  106 taaatgacgcctgctttcaccaactcatgagtcactggttgaatacccattgcgtgattgagccattcatcatagctacaaatagatgtctcagtgtggt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36745323 taaatgacgcctgctttcaccaactcatgagtcactggttgaatacacattgcgtgattgagccattcatcatagctacaaataggtgtctcagtgtggt 36745422  T
Q  206 tcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgcacttgctcggagttcattgatcagtggaggtggcattatagag 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745423 tcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgcacttgctcggagttcattgatcagtggaggtggcattatagag 36745522  T
Q  306 caagcatttttgccaggaccgtacgctgttgagatgtcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaaga 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745523 caagcatttttgccaggaccgtacgctgttgagatgtcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaaga 36745622  T
Q  406 g 406  Q
    |    
T  36745623 g 36745623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 3e-26; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 163 - 268
Target Start/End: Complemental strand, 6274261 - 6274156
Alignment:
Q  163 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 262  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||||||||||||||||||| |||  || |||||||||||||||||||| || |||||    
T  6274261 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcatcctattcataagcttttacttccgcactatcgtgacacaatgaacattaatgc 6274162  T
Q  263 acttgc 268  Q
    ||||||    
T  6274161 acttgc 6274156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 163 - 268
Target Start/End: Complemental strand, 6288511 - 6288406
Alignment:
Q  163 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 262  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||||||||||||||||||| |||  || |||||||||||||||||||| || |||||    
T  6288511 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcatcctattcataagcttttacttccgcactatcgtgacacaatgaacattaatgc 6288412  T
Q  263 acttgc 268  Q
    ||||||    
T  6288411 acttgc 6288406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 142 - 408
Target Start/End: Complemental strand, 6450581 - 6450315
Alignment:
Q  142 ggttgaatacccattgcgtgattgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcg 241  Q
    |||||||||| |||   ||||| || |||||||||||||| |||||||||  ||| |||||  |||| || ||| |||||||| ||   || || || ||    
T  6450581 ggttgaatactcatgcagtgatggaaccattcatcatagcaacaaatagacatctaagtgtacttcacccgattaataagcttttattcccccattaccg 6450482  T
Q  242 tgacacaatgaatatcaatgcacttgctcggagttcattgatcagtggaggtggcattatagagcaagcatttttgccaggaccgtacgctgttgagatg 341  Q
    ||||||||| |||||||||| |||||||||     |  | |||| ||  || ||||||||||||||| ||||||  ||||||||  |  |  |||||||     
T  6450481 tgacacaataaatatcaatggacttgctcgacaagctctaatcaatgctggcggcattatagagcaaacattttgtccaggaccaaattccattgagatt 6450382  T
Q  342 tcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 408  Q
    || ||||||||||||||| ||||||||||  |||| |||||| |||| |||||||||||||||||||    
T  6450381 tcttctgcagtttacaagaattgggttttcactgatcaagcattaccagctgatcttatcaagaggt 6450315  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 523 - 674
Target Start/End: Complemental strand, 6273791 - 6273640
Alignment:
Q  523 ttatttagaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatggg 622  Q
    |||| ||||||| |||||||| ||||| | ||| | || ||||| ||||||||  ||||| | |||||||||| ||||| ||||||||||||||||||||    
T  6273791 ttatctagaggagtggctgttaaggatccaagttccccacacggccttcgccttctgatagaggactacccttatgctgctgatggattagagatatggg 6273692  T
Q  623 atgctattaaggcatgggtgaaagactatgttagtttgtactacaagacaga 674  Q
     || ||||||| |||||||  |||| ||||| | ||| ||||||||| ||||    
T  6273691 ctgttattaagtcatgggttgaagaatatgtgaatttctactacaagtcaga 6273640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 562 - 653
Target Start/End: Complemental strand, 6449990 - 6449899
Alignment:
Q  562 cacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgt 653  Q
    ||||| ||||| || |||||| | |||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||  ||||||||||    
T  6449990 cacggccttcgacttgtgatagaggactacccttatgctgttgatggactagaaatatgggatgctattaaggcatgggtccaagactatgt 6449899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 559 - 653
Target Start/End: Complemental strand, 6456460 - 6456366
Alignment:
Q  559 ccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgt 653  Q
    ||||| |||||||| || | | || |||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||  ||||||||||    
T  6456460 ccccatggacttcgtcttgcgttagaagactacccttatgctgttgatggactagaaatatgggatgctattaaggcatgggttcaagactatgt 6456366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 163 - 268
Target Start/End: Complemental strand, 6331640 - 6331535
Alignment:
Q  163 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 262  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| |||||||| || |||||||  || || ||||||||||||||||| || |||||    
T  6331640 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattcacaaacttctacttccacattatcgtgacacaatgaacattaatgc 6331541  T
Q  263 acttgc 268  Q
    ||||||    
T  6331540 acttgc 6331535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 163 - 268
Target Start/End: Complemental strand, 6351999 - 6351894
Alignment:
Q  163 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 262  Q
    ||||||||||||||||||| ||||| ||   ||| ||||||||||| ||||||||||| ||| |||  |||||||| |||||||||||||| || |||||    
T  6351999 ttgagccattcatcatagcaacaaacaggcatcttagtgtggttcaccctattcataaacttttacttcctcactaccgtgacacaatgaacataaatgc 6351900  T
Q  263 acttgc 268  Q
    ||||||    
T  6351899 acttgc 6351894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 163 - 408
Target Start/End: Complemental strand, 6456822 - 6456577
Alignment:
Q  163 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 262  Q
    |||| |||||||||||||| ||||||||   ||| |||||  |||| || ||| |||| ||| ||   ||||| |  ||||||||||| ||||||||||     
T  6456822 ttgaaccattcatcatagcaacaaataggcatctaagtgttcttcacccaattaataaacttttatttcctcatttccgtgacacaataaatatcaatgg 6456723  T
Q  263 acttgctcggagttcattgatcagtggaggtggcattatagagcaagcatttttgccaggaccgtacgctgttgagatgtcgtctgcagtttacaaggat 362  Q
    |||||||||    ||  | |||| ||  |||||||||||||||||| ||||||||||||||||  |  | || ||||| || ||   |||||||| ||||    
T  6456722 acttgctcgacaatctctaatcaatgctggtggcattatagagcaaacatttttgccaggaccaaattcagtcgagatttcttcaatagtttacagggat 6456623  T
Q  363 tgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 408  Q
    ||||||||  | ||||||||| |||| |||||||||||||||||||    
T  6456622 tgggttttcaccgaccaagcattaccggctgatcttatcaagaggt 6456577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 523 - 667
Target Start/End: Complemental strand, 6331132 - 6330988
Alignment:
Q  523 ttatttagaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatggg 622  Q
    |||| ||||||| |||||||| ||||| | | | | || || ||| |||||||  ||||| | |||||||||| ||||| ||||||| ||||||||||||    
T  6331132 ttatctagaggagtggctgttgaggatccaacttccccacatggaattcgccttctgatagaggactacccttatgctgctgatggactagagatatggg 6331033  T
Q  623 atgctattaaggcatgggtgaaagactatgttagtttgtactaca 667  Q
    ||||||| ||| |||||||  |||| ||||| ||||| |||||||    
T  6331032 atgctatcaagtcatgggttgaagaatatgtgagtttctactaca 6330988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 519 - 674
Target Start/End: Complemental strand, 6320674 - 6320519
Alignment:
Q  519 tgctttatttagaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagata 618  Q
    |||| ||| ||||||| |||||||| ||||| | | | | || || ||| |||||||  ||||| | |||||||||| ||||| ||||||| ||||||||    
T  6320674 tgctatatctagaggagtggctgttgaggatccaacttccccacatggaattcgccttctgatagaggactacccttatgctgctgatggactagagata 6320575  T
Q  619 tgggatgctattaaggcatgggtgaaagactatgttagtttgtactacaagacaga 674  Q
    ||||||||||| ||| |||||||  |||| ||||| | ||| ||||||||| ||||    
T  6320574 tgggatgctatcaagtcatgggttgaagaatatgtgaatttctactacaagtcaga 6320519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 6390729 - 6390630
Alignment:
Q  163 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 262  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| ||||||||||| ||| |||  || ||||||||| |||||||||| || |||||    
T  6390729 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattcataaacttttacttccacactatcgtaacacaatgaacataaatgc 6390630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 7458822 - 7458732
Alignment:
Q  163 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaa 253  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| ||||||||||| ||| |||  || ||||| ||||||||||||||    
T  7458822 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattcataaacttttacttccacactaccgtgacacaatgaa 7458732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 268
Target Start/End: Complemental strand, 6321133 - 6321028
Alignment:
Q  163 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 262  Q
    ||||||||||||||||||| || |||||   ||| ||||||||||| |||||||| || ||||| |  || || ||||||||||||||||| || |||||    
T  6321133 ttgagccattcatcatagcaactaataggcatcttagtgtggttcaccctattcacaaacttctgcttccacattatcgtgacacaatgaacattaatgc 6321034  T
Q  263 acttgc 268  Q
    ||||||    
T  6321033 acttgc 6321028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 6409934 - 6409835
Alignment:
Q  163 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 262  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| ||||||||||| ||  |||  || ||||||||| |||||||||| || |||||    
T  6409934 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattcataaactattacttccacactatcgtaacacaatgaacataaatgc 6409835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 528 - 674
Target Start/End: Complemental strand, 6288037 - 6287891
Alignment:
Q  528 tagaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgggatgct 627  Q
    ||||||| |||||||| ||||| | | | | || ||||| ||||||||  |||||||||| ||||||| ||||| |||||||||||||||||||   ||     
T  6288037 tagaggagtggctgttgaggatccaacttccccacacggccttcgccttctgataaaagattacccttatgctgctgatggattagagatatggacagca 6287938  T
Q  628 attaaggcatgggtgaaagactatgttagtttgtactacaagacaga 674  Q
    |||||| |||||||  |||| |||||   ||| ||||||||| ||||    
T  6287937 attaagtcatgggttgaagaatatgtgtatttctactacaagtcaga 6287891  T

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Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 265
Target Start/End: Complemental strand, 6362932 - 6362830
Alignment:
Q  163 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 262  Q
    ||||||||||| ||||||| ||||||||   ||| ||||||||||| ||||||||||| ||||| |  || || ||||||||||| ||||| || |||||    
T  6362932 ttgagccattcgtcatagcaacaaataggcatctaagtgtggttcaccctattcataaacttctgcttccacattatcgtgacacgatgaacataaatgc 6362833  T
Q  263 act 265  Q
    |||    
T  6362832 act 6362830  T

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Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 350 - 408
Target Start/End: Complemental strand, 6262757 - 6262699
Alignment:
Q  350 agtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 408  Q
    |||||| ||||||||||||||| | |||||||| || ||||||||||||||||| ||||    
T  6262757 agtttataaggattgggtttttacagaccaagccctccctgctgatcttatcaaaaggt 6262699  T

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Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 7471224 - 7471134
Alignment:
Q  163 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaa 253  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| | ||||||||| ||| |||  || |||||  |||||||||||||    
T  7471224 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccatattcataaacttttacttccacactactgtgacacaatgaa 7471134  T

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Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 597 - 674
Target Start/End: Complemental strand, 6390145 - 6390068
Alignment:
Q  597 tgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgttagtttgtactacaagacaga 674  Q
    ||||||||||||| |||||||||||| |||||||||| |||||||  | || ||||| | ||| ||||||||| ||||    
T  6390145 tgctgttgatggactagagatatgggctgctattaagtcatgggttgatgaatatgtcaatttctactacaagtcaga 6390068  T

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Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 603 - 641
Target Start/End: Complemental strand, 6409391 - 6409353
Alignment:
Q  603 tgatggattagagatatgggatgctattaaggcatgggt 641  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  6409391 tgatggattagagatatgggctgctattaagtcatgggt 6409353  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 589 - 650
Target Start/End: Complemental strand, 6262516 - 6262455
Alignment:
Q  589 tacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagacta 650  Q
    ||||||| ||||||||||||| | || || ||||||||||||||| |||||||  |||||||    
T  6262516 tacccttatgctgttgatggacttgacatttgggatgctattaagacatgggtacaagacta 6262455  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 6409746 - 6409689
Alignment:
Q  351 gtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 408  Q
    |||||||||||||||||||| || || ||||||||||||  |||||| ||||| ||||    
T  6409746 gtttacaaggattgggttttcccggatcaagcactacctaatgatctaatcaaaaggt 6409689  T

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Target: chr1 (Bit Score: 48; Significance: 7e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 165 - 268
Target Start/End: Original strand, 36925655 - 36925758
Alignment:
Q  165 gagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgcac 264  Q
    |||||||||||||||||| |||||||  |||| |||||  |||| ||||||||||||||  |||| ||||||| ||||||||| |||||||| |||| ||    
T  36925655 gagccattcatcatagcttcaaataggcgtcttagtgtacttcaccctattcataagctattacatcctcactttcgtgacaccatgaatataaatggac 36925754  T
Q  265 ttgc 268  Q
    ||||    
T  36925755 ttgc 36925758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 578 - 626
Target Start/End: Complemental strand, 47127158 - 47127110
Alignment:
Q  578 tgataaaagactacccttttgctgttgatggattagagatatgggatgc 626  Q
    ||||| |||||||||||||||||||||||||||| || |||||||||||    
T  47127158 tgatagaagactacccttttgctgttgatggattggaaatatgggatgc 47127110  T

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Target: chr2 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 833 - 1056
Target Start/End: Original strand, 42689650 - 42689873
Alignment:
Q  833 tccacgcagctgtcaatttcggacaatatccttacggtggtttaatcttgaaccgaccaactatgacaaggaggttaattcctgaaaagggaaccaaaga 932  Q
    ||||||||||||| ||||| ||||||||||||||||| ||||| ||  | ||||| |||||||| |  || || ||| |||||||  | |||||   | |    
T  42689650 tccacgcagctgttaattttggacaatatccttacggcggttttattctaaaccgcccaactatcagtagaagattacttcctgaggaaggaactgcaca 42689749  T
Q  933 atatgaagagatggagaaagatgaccaaagggcttatttgagaacaatcacaccaaagaccgaggctctcatcgaccttacggtgatagagatattgtca 1032  Q
    |||||| || |||| |||   |   |||| |||||| |||||||||||||| || |||    || |||| || |||||| | |||||||| |||||||||    
T  42689750 atatgatgaaatggtgaagagtcctcaaaaggcttacttgagaacaatcacgccgaagtttcagactcttattgacctttcagtgatagaaatattgtca 42689849  T
Q  1033 aggcatgcttctgatgaagtttac 1056  Q
    || |||||||||||||||||||||    
T  42689850 agacatgcttctgatgaagtttac 42689873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 330 - 408
Target Start/End: Original strand, 42689192 - 42689270
Alignment:
Q  330 gctgttgagatgtcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 408  Q
    ||||| || ||||| || || ||||||||| |||||||||| ||||| ||||| || || |||||||||||||||||||    
T  42689192 gctgtggaaatgtcttcagcggtttacaagaattgggttttccctgatcaagcccttccagctgatcttatcaagaggt 42689270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 563 - 621
Target Start/End: Original strand, 42689380 - 42689438
Alignment:
Q  563 acggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgg 621  Q
    |||||||||| ||  ||||| | |||||||||| |||||||||||||||||||||||||    
T  42689380 acggacttcgtcttctgatagaggactacccttatgctgttgatggattagagatatgg 42689438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1003 - 1052
Target Start/End: Complemental strand, 42692028 - 42691979
Alignment:
Q  1003 atcgaccttacggtgatagagatattgtcaaggcatgcttctgatgaagt 1052  Q
    ||||||||| | || ||||| |||||||||||||| ||||||||||||||    
T  42692028 atcgacctttccgttatagaaatattgtcaaggcacgcttctgatgaagt 42691979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 586 - 654
Target Start/End: Original strand, 9606050 - 9606118
Alignment:
Q  586 gactacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgtt 654  Q
    |||||||||| ||| ||||||||| | ||||||||||||||||||||| |||||||  |||||||||||    
T  9606050 gactacccttatgcagttgatggactcgagatatgggatgctattaagtcatgggtccaagactatgtt 9606118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 408
Target Start/End: Original strand, 9605567 - 9605833
Alignment:
Q  142 ggttgaatacccattgcgtgattgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcg 241  Q
    |||||||||| |||   ||| ||||||||||||||||||| ||||| |||  ||| |||||  |||| |||||| ||||| | ||| | || || |  ||    
T  9605567 ggttgaatactcatgcagtggttgagccattcatcatagcaacaaacagacatcttagtgttcttcaccctattaataagttgctagatccccatttccg 9605666  T
Q  242 tgacacaatgaatatcaatgcacttgctcggagttcattgatcagtggaggtggcattatagagcaagcatttttgccaggaccgtacgctgttgagatg 341  Q
    ||||||||| |||||||| | ||||||||| | | |  | || | ||  | ||| || || ||| || ||||||| || || ||| |  |||||||||||    
T  9605667 tgacacaataaatatcaacggacttgctcgaaatgctctaattaatgctgatggaataatcgaggaaacatttttacctgggccgaattctgttgagatg 9605766  T
Q  342 tcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 408  Q
    || || ||||  |||||| ||||||||||  |||| |||||| |||| |||||||||||||||||||    
T  9605767 tcatcagcagcatacaagaattgggttttcactgatcaagcattaccggctgatcttatcaagaggt 9605833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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