View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_20 (Length: 424)
Name: NF7332_low_20
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 1415503 - 1415243
Alignment:
| Q |
1 |
atatgaatgaaggattaattaccatggatgaagactattcttgacaactttttgaccatacttcctccatttgtaaccatcatcaagcacatctacatca |
100 |
Q |
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| T |
1415503 |
atatgaatgaaggattaattaccttggatgaagactattcttgacaactttttgaccatacttcctccatttgtaaccatcatcaagcacatctacatca |
1415404 |
T |
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| Q |
101 |
cttcttgtctggaaacaaaaccttggctctctaagtttcctcctcactttcaccttgctcttctctgctcctccactcctccacctatcatcatacaaat |
200 |
Q |
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| T |
1415403 |
cttcttgtctggaaacaaaaccttggctctctaagtttcctcctcactttcaccttgctcttctctgctcctccactcctccacctatcatcatacaaat |
1415304 |
T |
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| Q |
201 |
caac---atcttttttcttattagcttaagacattattaattaatatattatacgagtctt |
258 |
Q |
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| T |
1415303 |
caacatgatcttttttctaattagcttaagacattattaattaatatattatacgagtctt |
1415243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 1415175 - 1415110
Alignment:
| Q |
326 |
catgatttgtttgagttaaatatatatgaagtccattacgtgcatgcacttataagaaagagagaa |
391 |
Q |
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| T |
1415175 |
catgatttgtttgagtgaaatatatatgaagtctattacgtgcatgcacttataagaaagagagaa |
1415110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 38496022 - 38496084
Alignment:
| Q |
38 |
ttcttgacaactttttgaccatacttcctccatttgtaaccatcatcaagcacatctacatca |
100 |
Q |
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| T |
38496022 |
ttctttacaactttttgtccatacttcctccacttgtaaccatcatccaacacatccacatca |
38496084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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