View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_21 (Length: 420)
Name: NF7332_low_21
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 13 - 390
Target Start/End: Complemental strand, 41554985 - 41554604
Alignment:
| Q |
13 |
atggacatcaagtgcttctcgttcattcttcttaacttgcaattatgtcatttgattcaataatacttttgtgcatattagctggtatttggatgttttc |
112 |
Q |
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| T |
41554985 |
atggacaacaagtgcttctcgtccattcttcttaacttgcaattatgtcatttgattcaataatacttttgtgcatattagctggtatttggatgttttc |
41554886 |
T |
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| Q |
113 |
gagtacctcttaattttatgcagctacagcgacaacacgtcgtagccaacttattgatcaatctacgtgttcacttctaacgtaaacatcttgttctttg |
212 |
Q |
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| T |
41554885 |
gagtacctcttaattttatgcagctacagcgacaacacgtcgtagccaacttactgatcaatctacgtgttctcttctaacgtaaacatcttgttctttc |
41554786 |
T |
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| Q |
213 |
aaagcgcaaatatcgctatggtactt----atatgattatatccaaagatttgattaattatgagttactatgaccgatcaaggaacacaacgacgagaa |
308 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41554785 |
aaagcgcaaatatcgctatggtacttatatatatgattatatccaaagatttgattaattatgagttactatgaccgatcaaggaacacaacgacgagaa |
41554686 |
T |
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| Q |
309 |
ttaattctccaactacttgtgatttttgttaggagctatggtatgtttgttttacttgtagtcgtgttttttactcgtatta |
390 |
Q |
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| T |
41554685 |
ttaattctccaactacttgtgatttttgttaggagctatggtatgtttgttttacttgtagtcgtgttttttactcgtatta |
41554604 |
T |
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