View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_22 (Length: 409)
Name: NF7332_low_22
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 2836393 - 2835996
Alignment:
| Q |
1 |
ttgtttgtgttatagtttgtgtatgttgttggttggctattattcttatgtttggaatcataggattggttgtgtatagatatgagttaagatcttctcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2836393 |
ttgtttgtgttatagtttgtgtatgttgttggttggctattattcttatgtttggaatcataggattggttgtgtatagatatgagttaagatcttctcc |
2836294 |
T |
|
| Q |
101 |
atttaaactcnnnnnnnnnnnnnnnnnnngtagagataaatacataaaaatcttaaaaataattaatgatagtaagactcagttttttcatttaaactat |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2836293 |
atttaaactctttttcattttttccttttgtagagataaatacataaaaatcttaaaaataattaatgatagtaagactcagttttttcatttaaactat |
2836194 |
T |
|
| Q |
201 |
ttagtgattgacttggtagcaagtaagtgttgaggtcattgtttattgtttatgtgtggcttatgttttaaagttacttcgataagttgaaaaactaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2836193 |
ttagtgattgacttggtagcaagtaagtgttgaggtcattgtttattgtttatgtgtggcttatgttttaaagttacttcgataagttgaaaaactaaag |
2836094 |
T |
|
| Q |
301 |
ctggttgtttttgctatgaaacagatgttgaattcaaccattttattgacatactactcgaaggagtttccttgacaataattgttgattttattcat |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2836093 |
ctggttgtttttgctatgaaacagatgttgaattcaaccattttattgacatactactcgaaggagtttccttgacaataattgttgattttattcat |
2835996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 228 - 392
Target Start/End: Complemental strand, 2838718 - 2838554
Alignment:
| Q |
228 |
tgttgaggtcattgtttattgtttatgtgtggcttatgttttaaagttacttcgataagttgaaaaactaaagctggttgtttttgctatgaaacagatg |
327 |
Q |
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||||||||||||| ||| |||||| ||||| ||||||||||||||||||||||||||| ||||||||| |||| || ||||||||||||| ||||| ||| |
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| T |
2838718 |
tgttgaggtcattttttgttgtttgtgtgtagcttatgttttaaagttacttcgataaattgaaaaacaaaaggtgattgtttttgctataaaacaaatg |
2838619 |
T |
|
| Q |
328 |
ttgaattcaaccattttattgacatactactcgaaggagtttccttgacaataattgttgatttt |
392 |
Q |
| |
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||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||| |
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| T |
2838618 |
ttgaattcaacaattttattgacatactatccgaaggagttttcttgacaataattgctgatttt |
2838554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 228 - 392
Target Start/End: Complemental strand, 2843405 - 2843241
Alignment:
| Q |
228 |
tgttgaggtcattgtttattgtttatgtgtggcttatgttttaaagttacttcgataagttgaaaaactaaagctggttgtttttgctatgaaacagatg |
327 |
Q |
| |
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||||||||||||| ||| |||||| ||||| ||||||||||||||||||||||||||| ||||||||| |||| || ||||||||||||| ||||| ||| |
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| T |
2843405 |
tgttgaggtcattttttgttgtttgtgtgtagcttatgttttaaagttacttcgataaattgaaaaacaaaaggtgattgtttttgctataaaacaaatg |
2843306 |
T |
|
| Q |
328 |
ttgaattcaaccattttattgacatactactcgaaggagtttccttgacaataattgttgatttt |
392 |
Q |
| |
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||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||| |
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|
| T |
2843305 |
ttgaattcaacaattttattgacatactatccgaaggagttttcttgacaataattgctgatttt |
2843241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 2838899 - 2838790
Alignment:
| Q |
1 |
ttgtttgtgttatagtttgtgtatgttgttggttggctattattcttatgtttggaatcataggattggttgtgtatagatatgagttaagatcttctcc |
100 |
Q |
| |
|
|||||||||||| ||||| |||||||||| |||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| |
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| T |
2838899 |
ttgtttgtgttaaagtttttgtatgttgtctgttggccattgttcttatgtttggaatcgtaggatttgttgtgtatagatatgagttaagatcctctct |
2838800 |
T |
|
| Q |
101 |
atttaaactc |
110 |
Q |
| |
|
|||||||||| |
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|
| T |
2838799 |
atttaaactc |
2838790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 2843586 - 2843477
Alignment:
| Q |
1 |
ttgtttgtgttatagtttgtgtatgttgttggttggctattattcttatgtttggaatcataggattggttgtgtatagatatgagttaagatcttctcc |
100 |
Q |
| |
|
|||||||||||| ||||| |||||||||| |||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| |
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| T |
2843586 |
ttgtttgtgttaaagtttttgtatgttgtctgttggccattgttcttatgtttggaatcgtaggatttgttgtgtatagatatgagttaagatcctctct |
2843487 |
T |
|
| Q |
101 |
atttaaactc |
110 |
Q |
| |
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|||||||||| |
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|
| T |
2843486 |
atttaaactc |
2843477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 2800290 - 2800203
Alignment:
| Q |
133 |
gagataaatacataaaaatcttaaaaataattaatgatagtaagactcagttttttcatttaaactatttagtgattgacttggtagca |
221 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||| || || | ||||| |||||||||||| ||| ||||||||||||||| |
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| T |
2800290 |
gagataattacataaaaatcttaaaaattattaatgatagtgaggctta-tttttcaatttaaactattaagtaattgacttggtagca |
2800203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 392
Target Start/End: Complemental strand, 2800011 - 2799873
Alignment:
| Q |
264 |
tgttttaaagttacttcgataagttgaaaaactaaagctggttgtttt----------tgctatgaaacagatgttgaattcaaccattttattgacata |
353 |
Q |
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||||||| ||||| ||| |||||||||||||||||||||| ||||||| |||| |||| ||| | ||| ||||||||||||||||| || |
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| T |
2800011 |
tgttttagagttaattctataagttgaaaaactaaagctgattgtttttgcttgtttttgctttgaagtagaagatgatttcaaccattttattgagtta |
2799912 |
T |
|
| Q |
354 |
ctactcgaaggagtttccttgacaataattgttgatttt |
392 |
Q |
| |
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||| ||||| |||||||||||||||||||| ||||||| |
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| T |
2799911 |
ttacccgaagaagtttccttgacaataattgctgatttt |
2799873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 392
Target Start/End: Original strand, 2799476 - 2799535
Alignment:
| Q |
333 |
ttcaaccattttattgacatactactcgaaggagtttccttgacaataattgttgatttt |
392 |
Q |
| |
|
||||||||||||||||| || ||| ||||| |||||||| ||||||||||| ||||||| |
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|
| T |
2799476 |
ttcaaccattttattgagttattacccgaagaagtttcctcgacaataattgctgatttt |
2799535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 2800385 - 2800304
Alignment:
| Q |
29 |
ttggttggctattattcttatgtttggaatcataggattggttgtgtatagatatgagttaagatcttctccatttaaactc |
110 |
Q |
| |
|
|||| |||||||| || |||||||||||| ||||||| |||||||| ||||| |||||| ||||| | ||||||||||| |
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| T |
2800385 |
ttgggtggctattgtttttatgtttggaacagtaggatttgttgtgtaaagatacaagttaaaatcttatacatttaaactc |
2800304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2837543 - 2837498
Alignment:
| Q |
1 |
ttgtttgtgttatagtttgtgtatgttgttggttggctattattct |
46 |
Q |
| |
|
|||||| |||||||| || |||||||||||||||||||||| |||| |
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|
| T |
2837543 |
ttgtttttgttataggttctgtatgttgttggttggctattgttct |
2837498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2842230 - 2842185
Alignment:
| Q |
1 |
ttgtttgtgttatagtttgtgtatgttgttggttggctattattct |
46 |
Q |
| |
|
|||||| |||||||| || |||||||||||||||||||||| |||| |
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|
| T |
2842230 |
ttgtttttgttataggttctgtatgttgttggttggctattgttct |
2842185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 30760355 - 30760314
Alignment:
| Q |
130 |
gtagagataaatacataaaaa-tcttaaaaataattaatgat |
170 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||| |
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|
| T |
30760355 |
gtagagataaagacataaaaaatcttaaaaataattaatgat |
30760314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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