View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_24 (Length: 401)
Name: NF7332_low_24
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 24437188 - 24437573
Alignment:
| Q |
1 |
taggtcttcagagatgtggaaagagctgcaggctaaggtggactaattaccttcgccctgatctgaaacatggccatttctcggatggagaagagcaaac |
100 |
Q |
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| T |
24437188 |
taggtcttcagagatgtggaaagagctgcaggctaaggtggactaattaccttcgccctgatctgaaacatggccatttctcggatggagaagagcaaac |
24437287 |
T |
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| Q |
101 |
aattgtgaagcttcattcagtttttggtaacaggtaccacaaatgttatctatgcattaaggttatgttatgttattcatagtgtatgagattctcttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24437288 |
aattgtgaagcttcattcagtttttggtaacaggtaccacaaatgttatctatgcattaaggttatgttatgttattcgtagtgtatgagattctctttt |
24437387 |
T |
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| Q |
201 |
tcacattgttaatgatttgcttaaatggttgttcagatggtctctgatagcagcgcagctgccaggacgcaccgacaatgatgtcaaaaatcattggaac |
300 |
Q |
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| T |
24437388 |
tcacattgttaatgatttgcttaaatggttgttcagatggtctctgatagcagcgcagctgccaggacgcaccgacaatgatgtcaaaaatcattggaac |
24437487 |
T |
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| Q |
301 |
accaagctgaaaaagaaactgtcaggcatgggtatagaccctgtcactcacaagccattctcccatttaatggctgaaattgctac |
386 |
Q |
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| T |
24437488 |
accaagctgaaaaagaaactgtcaggcatgggtatagaccctgtcactcacaagccattctcccatttaatggctgaaattgctac |
24437573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 362
Target Start/End: Complemental strand, 14778780 - 14778692
Alignment:
| Q |
274 |
gacaatgatgtcaaaaatcattggaacaccaagctgaaaaagaaactgtcaggcatgggtatagaccctgtcactcacaagccattctc |
362 |
Q |
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| T |
14778780 |
gacaatgatgttaagaacaattggaacacaaagctgaaaaagaagctgtctcaaatggggatagaccctgttactcacaagcctttctc |
14778692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 31999900 - 31999949
Alignment:
| Q |
6 |
cttcagagatgtggaaagagctgcaggctaaggtggactaattaccttcg |
55 |
Q |
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||||| |||||||||||||||||||| ||||| |||||||| |||||||| |
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| T |
31999900 |
cttcaaagatgtggaaagagctgcagactaagatggactaactaccttcg |
31999949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 31939608 - 31939648
Alignment:
| Q |
12 |
agatgtggaaagagctgcaggctaaggtggactaattacct |
52 |
Q |
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| T |
31939608 |
agatgtggaaagagctgcagactaagatggactaactacct |
31939648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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