View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_25 (Length: 395)
Name: NF7332_low_25
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 7e-99; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 11195415 - 11195790
Alignment:
| Q |
1 |
catttgtaagcacgttgaacaaattatcatatagttgac-ttatcaccttaaacttgcaattttacgatacaatttgaatgaagttttaatannnnnnna |
99 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||||||||||||||| | |
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| T |
11195415 |
catttgtaagcacgttgaataaattatcatatagttgacattgtcaccttaaacttgaaattttacaatacaatttgaatgaagttttaatcttttttta |
11195514 |
T |
|
| Q |
100 |
caaagtcaacaatgagctgagaggctagcccggtgatgttagttgttgcagctgcatacactataatgaaagaatattttagtaaagtttgtatccaacg |
199 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
11195515 |
caaagtcaacaatgagctgagaggctagcccagtgatgttagttgttgcagctgcgtacactataatgaaagaatattttagtaaagtttgtaaccaatg |
11195614 |
T |
|
| Q |
200 |
atttcnnnnnnngtttactgcataactaaccgtagtaccttcttgcagaccatgcacctcatcctttattttcttcaccataattgcattgaatacactt |
299 |
Q |
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||| |||||||||| | |||| || |||| ||||||| ||||||| |||||| ||||| |||||||| |||| ||||| ||||||||| |
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| T |
11195615 |
attctttttattctttactgcattcccaaccataataccctcttgcacaccatgcctctcatcatttatcttcttcactataactgcatcaaatacactt |
11195714 |
T |
|
| Q |
300 |
gaaagaatgctcgtataataatcaaagtcttgttgttccgcaaccacgttattaacatcgagccaccttaagaccaaat |
378 |
Q |
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|||||||||||||||||||| ||||| | || |||||||||||||||| ||||||||||||||| | |||||||||| |
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|
| T |
11195715 |
gaaagaatgctcgtataatactcaaattgttcttgttccgcaaccacg---ttaacatcgagccacatgaagaccaaat |
11195790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 11154968 - 11155343
Alignment:
| Q |
1 |
catttgtaagcacgttgaacaaattatcatatagttgac-ttatcaccttaaacttgcaattttacgatacaatttgaatgaagttttaatannnnnnna |
99 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||||||||||||||| | |
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| T |
11154968 |
catttataagcacgttgaacaaattatcatatagttgacattgtcaccttaaacttgaaattttacaatacaatttgaatgaagttttaatcttttttta |
11155067 |
T |
|
| Q |
100 |
caaagtcaacaatgagctgagaggctagcccggtgatgttagttgttgcagctgcatacactataatgaaagaatattttagtaaagtttgtatccaacg |
199 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | |
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|
| T |
11155068 |
caaagtcaacaatgagttgagaggctagcccggtgatgttagttgttgcagctgcatggactataatgaaagaatattttagtaaagtttgtttccaatg |
11155167 |
T |
|
| Q |
200 |
atttcnnnnnnngtttactgcataactaaccgtagtaccttcttgcagaccatgcacctcatcctttattttcttcaccataattgcattgaatacactt |
299 |
Q |
| |
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||| |||||||||| | |||| || |||| ||||||| ||||||| |||||| ||||| |||||||| |||| ||||| ||||||||| |
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| T |
11155168 |
attctttttattctttactgcattcccaaccataataccctcttgcacaccatgcctctcatcatttatcttcttcactataactgcatcaaatacactt |
11155267 |
T |
|
| Q |
300 |
gaaagaatgctcgtataataatcaaagtcttgttgttccgcaaccacgttattaacatcgagccaccttaagaccaaat |
378 |
Q |
| |
|
|||||||||||||||||||| ||||| | || ||||||||||| |||| ||||||||||||||| | |||||||||| |
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|
| T |
11155268 |
gaaagaatgctcgtataatactcaaattgttcttgttccgcaatcacg---ttaacatcgagccacgtaaagaccaaat |
11155343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 227 - 337
Target Start/End: Original strand, 11208296 - 11208406
Alignment:
| Q |
227 |
aaccgtagtaccttcttgcagaccatgcacctcatcctttattttcttcaccataattgcattgaatacacttgaaagaatgctcgtataataatcaaag |
326 |
Q |
| |
|
|||| |||||||||||| || ||||||| ||||||||||||| |||||| ||||||| || || |||||||||||||||||| ||||| | ||||| |
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| T |
11208296 |
aaccatagtaccttcttccacaccatgcccctcatcctttatcatcttcaaaataattggatcaaacacacttgaaagaatgctcctataacactcaaaa |
11208395 |
T |
|
| Q |
327 |
tcttgttgttc |
337 |
Q |
| |
|
||||||||||| |
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|
| T |
11208396 |
tcttgttgttc |
11208406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 378
Target Start/End: Original strand, 11169474 - 11169622
Alignment:
| Q |
227 |
aaccgtagtaccttcttgcagaccatgcacctcatcctttattttcttcaccataattgcattgaatacacttgaaagaatgctcgtataataatcaaag |
326 |
Q |
| |
|
|||| ||||||||||||||| || ||| ||||||||||||| |||| | | ||||| || || ||||||||||||||||| |||||| ||||| |
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|
| T |
11169474 |
aaccatagtaccttcttgcacacaatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaagaatgctactataatgttcaaaa |
11169573 |
T |
|
| Q |
327 |
tcttgttgttccgcaaccacgttattaacatcgagccaccttaagaccaaat |
378 |
Q |
| |
|
||||||||||| |||||||| |||||| || |||||| | |||||||||| |
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| T |
11169574 |
tcttgttgttctgcaaccac---attaacgtcaagccacttaaagaccaaat |
11169622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 11246513 - 11246454
Alignment:
| Q |
123 |
gctagcccggtgatgttagttgttgcagctgcatacactataatgaaagaatattttagt |
182 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||| ||||| |||||||||| |
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|
| T |
11246513 |
gctagcccgatgatgttagttgttgcagctgcaaacactatctggaaagtatattttagt |
11246454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 378
Target Start/End: Original strand, 11274872 - 11275006
Alignment:
| Q |
241 |
cttgcagaccatgcacctcatcctttattttcttcaccataattgcattgaatacacttgaaagaatgctcgtataataatcaaagtcttgttgttccgc |
340 |
Q |
| |
|
|||||| |||||| ||||||||||||| |||| | | ||||| || || |||||||||||||||||| ||||| | ||||| ||||||||||| || |
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| T |
11274872 |
cttgcacaccatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaagaatgctcctataacattcaaaatcttgttgttctgc |
11274971 |
T |
|
| Q |
341 |
aaccacgttattaacatcgagccaccttaagaccaaat |
378 |
Q |
| |
|
|||||| |||||| || |||||| | |||||||||| |
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|
| T |
11274972 |
aaccac---attaacgtcaagccacttaaagaccaaat |
11275006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 11315976 - 11315911
Alignment:
| Q |
239 |
ttcttgcagaccatgcacctcatcctttattttcttcaccataattgcattgaatacacttgaaag |
304 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| |||||||| |||||| ||| || ||||||||||| |
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| T |
11315976 |
ttcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaag |
11315911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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