View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_27 (Length: 386)
Name: NF7332_low_27
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 6 - 365
Target Start/End: Complemental strand, 38820311 - 38819951
Alignment:
| Q |
6 |
gtttggtggtcgatgttgttgaataactaaaatattgctgtacattattaattcaatatggaatatgctttatatattttgcacacacatcctttccttt |
105 |
Q |
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| T |
38820311 |
gtttggtggtcgatgttgttgaataactaaaatattgctgtacattattaattcaatatggaatatgttttatatattttgcacacacatcctttccttt |
38820212 |
T |
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| Q |
106 |
cctttatttatcaaagaagaataatatgctaaccaagatccatgcctaattgccttttgttggtgcttggtataaaaatctacctctt-ttaacatgtat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38820211 |
cctttatttatcaaagaagaataatatgctaaccaagatccatgcctaattgccttttgttggtgcttggtataaaaatctacctcttgttaacatgtat |
38820112 |
T |
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| Q |
205 |
gcgcattcatgtgacaaacaattggatattcagctataacannnnnnnnnnnnacgtaggggatgaatttactctataaggaatttactttcaggagtta |
304 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
38820111 |
gcgcattcatgtgacaaacaattggatattcggctataacattttttgtttttacgtagggaatgaatttactctataaggaatttactttcgggagtta |
38820012 |
T |
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| Q |
305 |
tatataaacgagggtgtgaggttcgtggtggtgacagttagttttttattcgtgtgccctt |
365 |
Q |
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||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38820011 |
tatttaaacgagggtgtgaggtccgtggtggtgacagttagttttttattcgtgtgccctt |
38819951 |
T |
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