View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_29 (Length: 343)
Name: NF7332_low_29
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 36523417 - 36523090
Alignment:
| Q |
16 |
gattcaactcattaacattcctattatcgccgcaggtgcatctggcattccaccagtgagatctgtgaattacattacttggggaat---------ggtt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36523417 |
gattcaactcattaacattcctattatcgccgcaggtgcatctggcattccaccagtgagatctgtgaattacattacttggggaattgttggaatggtt |
36523318 |
T |
|
| Q |
107 |
ttcaatttctatgtttatagaaagttcaaggcatggtgggctagacatacttatatcctttctgctggtttagatgctggagttgcctttataggtttac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36523317 |
ttcaatttctatgtttatagaaagttcaaggcatggtgggctagacatacttatatcctttctgctggtttagatgctggagttgcctttataggtttac |
36523218 |
T |
|
| Q |
207 |
tactttatttttctcttcaatcttatggtatttatggtccaacttggtggggtcttgaagcagatcattgccctttagctagatgtcctacatctccagg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36523217 |
tactttatttttctcttcaatcttatggtatttatggtccaacttggtggggtcttgaagcagatcattgccctttagctagatgtcctacatctccagg |
36523118 |
T |
|
| Q |
307 |
tgtacatgcagagggttgtcatattctt |
334 |
Q |
| |
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|||||||||||||||||||||| ||||| |
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| T |
36523117 |
tgtacatgcagagggttgtcatgttctt |
36523090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 326
Target Start/End: Complemental strand, 36530250 - 36529931
Alignment:
| Q |
16 |
gattcaactcattaacattcctattatcgccgcaggtgcatctggcattccaccagtgagatctgtgaattacattacttggggaatggtt--------- |
106 |
Q |
| |
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||||||| |||| ||||||||||||||| ||||||||||||| ||| ||||| ||||||||||||||||| ||||||||||| || ||| |
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| T |
36530250 |
gattcaattcatcaacattcctattatcattgcaggtgcatctgacatcccacctgtgagatctgtgaattatattacttgggggattgttggaatattt |
36530151 |
T |
|
| Q |
107 |
ttcaatttctatgtttatagaaagttcaaggcatggtgggctagacatacttatatcctttctgctggtttagatgctggagttgcctttataggtttac |
206 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36530150 |
ttcaatttctatgtttatagaaagttcaaagcatggtgggctagacatacttacatcctttcagctggtttagatgctggagttgcctttataggtttac |
36530051 |
T |
|
| Q |
207 |
tactttatttttctcttcaatcttatggtatttatggtccaacttggtggggtcttgaagcagatcattgccctttagctagatgtcctacatctccagg |
306 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| || |||||||| |||| ||| |||||| ||||||| |
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| T |
36530050 |
tactttatttttctcttcaatcttacggtatttatggtccaacttggtggggtcttgaaccagaccactgccctttggctaaatgccctacagctccagg |
36529951 |
T |
|
| Q |
307 |
tgtacatgcagagggttgtc |
326 |
Q |
| |
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|||||||||||||||||||| |
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| T |
36529950 |
tgtacatgcagagggttgtc |
36529931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 98 - 326
Target Start/End: Complemental strand, 36535771 - 36535543
Alignment:
| Q |
98 |
ggaatggttttcaatttctatgtttatagaaagttcaaggcatggtgggctagacatacttatatcctttctgctggtttagatgctggagttgccttta |
197 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || || ||||||||||||||||||||||| |||| |
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| T |
36535771 |
ggaatgtttttcaatttctatgtttatagaaagttcagagtttggtgggctagacatacttatattctctcagctggtttagatgctggagttgctttta |
36535672 |
T |
|
| Q |
198 |
taggtttactactttatttttctcttcaatcttatggtatttatggtccaacttggtggggtcttgaagcagatcattgccctttagctagatgtcctac |
297 |
Q |
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| |||||| |||||||||||||||||||||| |||||||||| ||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||| |
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| T |
36535671 |
tgggtttagtactttatttttctcttcaatcctatggtatttttggtccaacatggtggggccttgaagcagatcactgccctttggctagatgtcctac |
36535572 |
T |
|
| Q |
298 |
atctccaggtgtacatgcagagggttgtc |
326 |
Q |
| |
|
| ||||||||||| | || |||||||||| |
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| T |
36535571 |
agctccaggtgtatacgctgagggttgtc |
36535543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 107 - 271
Target Start/End: Original strand, 42060071 - 42060235
Alignment:
| Q |
107 |
ttcaatttctatgtttatagaaagttcaaggcatggtgggctagacatacttatatcctttctgctggtttagatgctggagttgcctttataggtttac |
206 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||||||||||||||| ||||| || || || |||| ||| |||||||| |||| || || | | | |
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| T |
42060071 |
ttcaatttctatgtttacaaaaatttcaaggcatggtgggctagacacacttacattctctcagctgctttggatgctggtattgctttcatggctgtgt |
42060170 |
T |
|
| Q |
207 |
tactttatttttctcttcaatcttatggtatttatggtccaacttggtggggtcttgaagcagat |
271 |
Q |
| |
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| || |||||||| ||||||||||||| | | | |||||||||||||||||||||||| |||||| |
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| T |
42060171 |
tgctctatttttcacttcaatcttatgatgtctttggtccaacttggtggggtcttgaggcagat |
42060235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 262
Target Start/End: Original strand, 42083948 - 42084103
Alignment:
| Q |
107 |
ttcaatttctatgtttatagaaagttcaaggcatggtgggctagacatacttatatcctttctgctggtttagatgctggagttgcctttataggtttac |
206 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||||||||||||||| ||||| || || || |||| ||| |||||||| ||||| || || | | | |
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| T |
42083948 |
ttcaatttctatgtttacaaaaatttcaaggcatggtgggctagacacacttacattctctcagctgctttggatgctggtgttgctttcatggctgtgt |
42084047 |
T |
|
| Q |
207 |
tactttatttttctcttcaatcttatggtatttatggtccaacttggtggggtctt |
262 |
Q |
| |
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| || |||||| | ||||||||||||| ||| ||||||| |||||||||||||| |
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| T |
42084048 |
tgctctattttgcacttcaatcttatgatatcattggtccagcttggtggggtctt |
42084103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 107 - 262
Target Start/End: Original strand, 42075368 - 42075523
Alignment:
| Q |
107 |
ttcaatttctatgtttatagaaagttcaaggcatggtgggctagacatacttatatcctttctgctggtttagatgctggagttgcctttataggtttac |
206 |
Q |
| |
|
|||||| |||||||||| | ||| ||||||| ||||||||||||||| ||||| || || || |||| ||| |||||||| ||||| || || | | | |
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| T |
42075368 |
ttcaatatctatgtttacaaaaaattcaaggtatggtgggctagacacacttacattctctcagctgctttggatgctggtgttgctttcatggctgtgt |
42075467 |
T |
|
| Q |
207 |
tactttatttttctcttcaatcttatggtatttatggtccaacttggtggggtctt |
262 |
Q |
| |
|
| || |||||| ||||||||||||||||| | ||||||| |||||||||||||| |
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|
| T |
42075468 |
tgctctattttctacttcaatcttatggtatctttggtccagcttggtggggtctt |
42075523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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