View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_31 (Length: 338)
Name: NF7332_low_31
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 11019281 - 11018976
Alignment:
| Q |
15 |
ctgtgccactcacaaacctattttctgattggttcacttttaaagccaccttcatttcatcgactaaaaccaatctatttagcctttgttctgcgaacaa |
114 |
Q |
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| T |
11019281 |
ctgtgccactcacaaacctattttctgattggttcactttcaaagccaccttcatttcatcgactaaaaccaatctatttagcctttgttctgcgaacaa |
11019182 |
T |
|
| Q |
115 |
aggccatgcaatcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccacccacggagttatgactcaatatc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11019181 |
aggccatgcaatcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccacccacggagttatgactcaatatc |
11019082 |
T |
|
| Q |
215 |
gcaacttgtggggcccagtttctcacaaccattcccttgtcctttgtcctcttcaaaaacccttctggcaataactcatccaaactcagttcgtctgagt |
314 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||| | |||||||| |
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| T |
11019081 |
gcaacttgtggggcccaatttctcacaaccattcccttgtcctttgtcctctccaaaaacccttctggaaataactcgtccaaactcaacttgtctgagt |
11018982 |
T |
|
| Q |
315 |
ctggtt |
320 |
Q |
| |
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|||||| |
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| T |
11018981 |
ctggtt |
11018976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 11050393 - 11050227
Alignment:
| Q |
19 |
gccactcacaaacctattttctgattggttcacttttaaagccaccttcatttcatcgactaaaaccaatctatttagcctttgttctgcgaacaaaggc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11050393 |
gccactcacaaacctattttctgattggttcacttttaaagccaccttcatttcatcgactaaaaccaatctatttagcctttgttctgcaaacaaaggc |
11050294 |
T |
|
| Q |
119 |
catgcaatcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaa |
185 |
Q |
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| T |
11050293 |
catgcaatcattggcaccccttcataaatagcttccaacacggagttccatccacaatgaatcacaa |
11050227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 56 - 306
Target Start/End: Complemental strand, 11002859 - 11002609
Alignment:
| Q |
56 |
aaagccaccttcatttcatcgactaaaaccaatctatttagcctttgttctgcgaacaaaggccatgcaatcattggcaccccttcacaaatagcttcca |
155 |
Q |
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||||||||||||||||| || || |||| || | | || | |||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
11002859 |
aaagccaccttcatttcctcaaccaaaatcattttgttcaacctttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatagcttcca |
11002760 |
T |
|
| Q |
156 |
acacggagttccatccacaatgagtcacaaatccacccacggagttatgactcaatatcgcaacttgtggggcccagtttctcacaaccattcccttgtc |
255 |
Q |
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|||| |||||||||||||| |||||||| |||||||| || || | ||||||||||| ||| ||||||| ||||| |||||||| ||||||||||| || |
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| T |
11002759 |
acactgagttccatccacagtgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtggtgcccaatttctcaccaccattcccttttc |
11002660 |
T |
|
| Q |
256 |
ctttgtcctcttcaaaaacccttctggcaataactcatccaaactcagttc |
306 |
Q |
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||| ||||||| |||||||||||||||||| || ||||||||||| ||||| |
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| T |
11002659 |
cttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttc |
11002609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 125 - 306
Target Start/End: Complemental strand, 11079931 - 11079750
Alignment:
| Q |
125 |
atcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccacccacggagttatgactcaatatcgcaacttgtg |
224 |
Q |
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|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| || ||| |||| || | ||| | | |||||| |
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| T |
11079931 |
atcattggaactccttcgcaaatagcttccaacacggagttccatccacaatgagtcacgaacccaccaactgagctatgtcttagtattgaaccttgtg |
11079832 |
T |
|
| Q |
225 |
gggcccagtttctcacaaccattcccttgtcctttgtcctcttcaaaaacccttctggcaataactcatccaaactcagttc |
306 |
Q |
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| T |
11079831 |
gtgcccagtttctaacaaccattcccttctcctttgtcctctccaaaaacccttctggcaacaactcatccaaacttagttc |
11079750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 95 - 300
Target Start/End: Complemental strand, 10968640 - 10968435
Alignment:
| Q |
95 |
agcctttgttctgcgaacaaaggccatgcaatcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccaccca |
194 |
Q |
| |
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|||||||||||||| | || ||||| || | ||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| | |
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| T |
10968640 |
agcctttgttctgcatataatggccacgccaccataggcactccttcacaaatagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaa |
10968541 |
T |
|
| Q |
195 |
cggagttatgactcaatatcgcaacttgtggggcccagtttctcacaaccattcccttgtcctttgtcctcttcaaaaacccttctggcaataactcatc |
294 |
Q |
| |
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|||| ||| | ||||| ||| ||||||| ||||| ||||| | ||||||||||| | ||||||||||| |||||||||||| || | ||||| || |
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| T |
10968540 |
tcgagtcatgctttaatattgcaccttgtggtgcccaatttcttgccaccattcccttttgctttgtcctctccaaaaacccttcaggaagcaactcgtc |
10968441 |
T |
|
| Q |
295 |
caaact |
300 |
Q |
| |
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|||||| |
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| T |
10968440 |
caaact |
10968435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 95 - 300
Target Start/End: Complemental strand, 10982590 - 10982385
Alignment:
| Q |
95 |
agcctttgttctgcgaacaaaggccatgcaatcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccaccca |
194 |
Q |
| |
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|||||||||||||| |||| |||||||| | ||| ||||| |||||||| | |||||||||||| ||||||||||||||||| ||||| |||||||| | |
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| T |
10982590 |
agcctttgttctgcatacaatggccatgccaccataggcactccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccga |
10982491 |
T |
|
| Q |
195 |
cggagttatgactcaatatcgcaacttgtggggcccagtttctcacaaccattcccttgtcctttgtcctcttcaaaaacccttctggcaataactcatc |
294 |
Q |
| |
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|||| ||| | ||||| ||| ||||||| ||||| ||||| || ||||||||| | || |||||||||| |||||||||||| || | ||||| || |
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| T |
10982490 |
tcgagtcatgctttaatattgcaccttgtggtgcccaatttcttaccaccattcccctttcttttgtcctctccaaaaacccttcagggagcaactcgtc |
10982391 |
T |
|
| Q |
295 |
caaact |
300 |
Q |
| |
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|||||| |
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|
| T |
10982390 |
caaact |
10982385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 24462263 - 24462344
Alignment:
| Q |
151 |
ttccaacacggagttccatccacaatgagtcacaaatccacccacggagttatgactcaatatcgcaacttgtggggcccag |
232 |
Q |
| |
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||||||||| |||||||||||||||||||||| |||| |||| || | |||| ||||||||| ||||||||||||||| |
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| T |
24462263 |
ttccaacactgagttccatccacaatgagtcaaaaatgcaccaacagctctatgtctcaatatcatcacttgtggggcccag |
24462344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 23628117 - 23628149
Alignment:
| Q |
150 |
cttccaacacggagttccatccacaatgagtca |
182 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |
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|
| T |
23628117 |
cttccaacaccgagttccatccacaatgagtca |
23628149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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