View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_33 (Length: 334)
Name: NF7332_low_33
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 10 - 328
Target Start/End: Original strand, 47422214 - 47422532
Alignment:
| Q |
10 |
atgatgataacgacaaggtgaggagtgagaaatcaaagaacaaaaagaggaagaggcgccgtgatagatttgaaatgttgaagagtttttgtgagacagt |
109 |
Q |
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| T |
47422214 |
atgatgatgacgacaaggtgaggatggagaaatcaaagaacaaaaagaggaagaggcgccgtgatagatttgaaatgttgaagagtttttgtgagacagt |
47422313 |
T |
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| Q |
110 |
ggttaacaaaataatagcacaacaagaagaaatacacaataagctacttgaagacatgctcaaaagagatcaagaaaagcttgatagagaggaaacatgg |
209 |
Q |
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| T |
47422314 |
ggttaataaaataatagcacaacaagaagaaatacacaataagctacttgaagacatgctcaaaagagatcaagaaaagcttgatagagaggaaacatgg |
47422413 |
T |
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| Q |
210 |
aaaaaacaagagattgaaaggatgaacatgatggtacaagaacaacaagctattgcaagtgatagacaagccaacatcattgaattcttgaacaaatatc |
309 |
Q |
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| T |
47422414 |
aaaaaacaagagattgaaaggatgaacatgatggtacaagaacaacaagctattgcaagtgatagacaagccaacatcattgaattcttgaacaaatatc |
47422513 |
T |
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| Q |
310 |
tagccacgtgatattcttc |
328 |
Q |
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| T |
47422514 |
tagccacaggatattcttc |
47422532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 223
Target Start/End: Complemental strand, 36128126 - 36127974
Alignment:
| Q |
71 |
tgatagatttgaaatgttgaagagtttttgtgagacagtggttaacaaaataatagcacaacaagaagaaatacacaataagctacttgaagacatgctc |
170 |
Q |
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| T |
36128126 |
tgatagatttgaagtgtttaagggtttttgtgagagtgttgtaaagaaaatgatggatcaacaagaagaaatgcacaacaagcttattgaagatatggtt |
36128027 |
T |
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| Q |
171 |
aaaagagatcaagaaaagcttgatagagaggaaacatggaaaaaacaagagat |
223 |
Q |
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||||||||| |||| ||| || |||||| ||| | ||||| ||||||||||| |
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| T |
36128026 |
aaaagagatgaagagaagtttagtagagaagaagcttggaagaaacaagagat |
36127974 |
T |
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