View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_34 (Length: 321)
Name: NF7332_low_34
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 36604566 - 36604873
Alignment:
| Q |
1 |
tatacatatgaataaagataacagttaattactaatctgccattaagaaaatagcatgcttctttaataaaagtgaatgtctctatcgtcaagacctcct |
100 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36604566 |
tatacatatgaataaagataacagtgaattaccaatctgccattaagaaaagagcatgcttctttaataaaagtgaatgtctctatcgttaagacctcct |
36604665 |
T |
|
| Q |
101 |
gtctgttttgttctatttatggatggatggtttcattatttatttgtacaaatcatccattcctaattcctagtttaagtatggtttctgactttctgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36604666 |
gtctgttttgttctatttatggatggatggtttcattatttatttgtacaaatcattcattcctaattcctagtttaagtatggtttctgactttatgtg |
36604765 |
T |
|
| Q |
201 |
tcattatatattgcttattttatttttccttctga--ttttgtttattccaagattggagaatattgcagtgtacatgaaccgttaactatgtttggcca |
298 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36604766 |
tcattatatattgcttattttatttttccttctgattttttgtttattccaagattggagaatattgcagtgtacatgaaccgttaactatgtttggcca |
36604865 |
T |
|
| Q |
299 |
tagcatat |
306 |
Q |
| |
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|||||||| |
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| T |
36604866 |
tagcatat |
36604873 |
T |
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