View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7332_low_36 (Length: 314)

Name: NF7332_low_36
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7332_low_36
NF7332_low_36
[»] chr1 (8 HSPs)
chr1 (5-243)||(30528814-30529051)
chr1 (246-306)||(14758526-14758587)
chr1 (247-306)||(44920186-44920246)
chr1 (268-314)||(51681629-51681676)
chr1 (248-314)||(25670841-25670908)
chr1 (246-306)||(41649853-41649914)
chr1 (246-314)||(43492199-43492268)
chr1 (247-314)||(19547119-19547187)
[»] chr2 (3 HSPs)
chr2 (252-314)||(37597460-37597523)
chr2 (278-314)||(32438152-32438188)
chr2 (278-314)||(33963013-33963049)
[»] chr6 (1 HSPs)
chr6 (243-314)||(29407967-29408039)
[»] chr4 (5 HSPs)
chr4 (247-314)||(50131028-50131096)
chr4 (249-314)||(31655473-31655539)
chr4 (247-314)||(28695734-28695802)
chr4 (238-266)||(36702758-36702786)
chr4 (278-314)||(39804957-39804993)
[»] chr5 (3 HSPs)
chr5 (246-305)||(248541-248601)
chr5 (247-314)||(20125724-20125790)
chr5 (246-314)||(591294-591363)
[»] chr3 (3 HSPs)
chr3 (278-314)||(31294370-31294406)
chr3 (249-306)||(3973783-3973841)
chr3 (249-306)||(4009564-4009622)
[»] scaffold0633 (1 HSPs)
scaffold0633 (246-306)||(5082-5143)
[»] chr8 (1 HSPs)
chr8 (246-314)||(20142509-20142578)
[»] chr7 (4 HSPs)
chr7 (246-314)||(5248703-5248772)
chr7 (246-314)||(6775198-6775267)
chr7 (246-314)||(44319925-44319994)
chr7 (278-314)||(6771837-6771873)
[»] scaffold0036 (1 HSPs)
scaffold0036 (278-306)||(21301-21329)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 30528814 - 30529051
Alignment:
Q  5 ggtgggtagataatactatatacatatggttgcaaatttgctgtgtttagttgcaaaatttaatttagtcaataatgaaccgttatgagatactagtatt 104  Q
    |||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30528814 ggtgggtccataatgctatatacatatggttgcaaatttgctgtgtttagttgcaaaatttaatttagtcaataatgaaccgttatgagatactagtatt 30528913  T
Q  105 gaatgaagactgcatttggattggattagggtttaatgatttaacactaaagcacaaagttgatgtgtaatgattttgtttctctgctgatgtatctctt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  30528914 gaatgaagactgcatttggattggattagggtttaatgatttaacactaaagcataaagttgatgtgtaatgattttgtttctctgctgatgtatct-tt 30529012  T
Q  205 tctaagacattcttatccatgtattggtgatagttatta 243  Q
    |||| ||||||||||||| |||||| || ||||||||||    
T  30529013 tctaggacattcttatccttgtattagtcatagttatta 30529051  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 14758526 - 14758587
Alignment:
Q  246 agggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattc 306  Q
    |||||||||||||||||||   |||||||||| ||||| |||||||||||||||||||||||    
T  14758526 agggtcttgttaacgagtgtcctaagggcactctttaaagttttccaattaagaaattattc 14758587  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 44920186 - 44920246
Alignment:
Q  247 gggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattc 306  Q
    |||||||||||||||||| |||||||||| | ||||||||||  |||||||||||||||||    
T  44920186 gggtcttgttaacgagtgttttaagggcattctttaaggtttctcaattaagaaattattc 44920246  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 51681629 - 51681676
Alignment:
Q  268 taagggcact-tttaaggttttccaattaagaaattattctttgaaaa 314  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||    
T  51681629 taagggcactctttaaggtttcccaattaagaaattattctttgaaaa 51681676  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 314
Target Start/End: Complemental strand, 25670908 - 25670841
Alignment:
Q  248 ggtcttgttaacgagtgctttaagggcac-ttttaaggttttccaattaagaaattattctttgaaaa 314  Q
    ||||||||||||||||||  |||| |||| |||||||| |||| ||| ||||||||||||||| ||||    
T  25670908 ggtcttgttaacgagtgccctaagagcaccttttaaggatttctaataaagaaattattctttaaaaa 25670841  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 41649853 - 41649914
Alignment:
Q  246 agggtcttgttaacgagtgctttaagggcactttt-aaggttttccaattaagaaattattc 306  Q
    |||||||||||||| ||||| |||||  ||||||| ||||||| |||||||| |||||||||    
T  41649853 agggtcttgttaacaagtgccttaagaacactttttaaggtttcccaattaaaaaattattc 41649914  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 43492268 - 43492199
Alignment:
Q  246 agggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaa 314  Q
    ||||||||||||||||||||  |||||||||| ||||||| || | ||| ||||||||||| ||| ||||    
T  43492268 agggtcttgttaacgagtgccctaagggcactctttaaggattcctaataaagaaattattttttaaaaa 43492199  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 314
Target Start/End: Complemental strand, 19547187 - 19547119
Alignment:
Q  247 gggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaa 314  Q
    |||||||| ||||||||||  |||||||| | ||||||| || |||| ||||||||||||| |||||||    
T  19547187 gggtcttgctaacgagtgccctaagggcattctttaaggattcccaagtaagaaattattcattgaaaa 19547119  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 37597460 - 37597523
Alignment:
Q  252 ttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaa 314  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||    
T  37597460 ttgttaacgagtgctttaagggcactctttaaggtttcccaattaagaaattgttctttgaaaa 37597523  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 32438188 - 32438152
Alignment:
Q  278 tttaaggttttccaattaagaaattattctttgaaaa 314  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  32438188 tttaaggttttccaattaaaaaattattatttgaaaa 32438152  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 33963049 - 33963013
Alignment:
Q  278 tttaaggttttccaattaagaaattattctttgaaaa 314  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  33963049 tttaaagttttccaattaagaaattattctttaaaaa 33963013  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 29407967 - 29408039
Alignment:
Q  243 attagggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaa 314  Q
    ||||||||||||||||||||||| ||||||||||| ||||||| || | ||| ||||||||||||||| ||||    
T  29407967 attagggtcttgttaacgagtgccttaagggcactctttaaggattcctaataaagaaattattctttaaaaa 29408039  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 314
Target Start/End: Original strand, 50131028 - 50131096
Alignment:
Q  247 gggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaa 314  Q
    |||||||||||||||||||  | |||||| | |||||||||| ||||||||||||||||||||||||||    
T  50131028 gggtcttgttaacgagtgccctgagggcattctttaaggtttcccaattaagaaattattctttgaaaa 50131096  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 31655473 - 31655539
Alignment:
Q  249 gtcttgttaacgagtgctttaagggcactttt-aaggttttccaattaagaaattattctttgaaaa 314  Q
    |||||||||||||||||  | ||||||||||| ||||||| |||||||| |||||||||||| ||||    
T  31655473 gtcttgttaacgagtgcccttagggcactttttaaggtttcccaattaaaaaattattctttaaaaa 31655539  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 314
Target Start/End: Original strand, 28695734 - 28695802
Alignment:
Q  247 gggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaa 314  Q
    |||||||||||||||||||  |||||||||| ||||||| || | ||| ||||||||||| ||| ||||    
T  28695734 gggtcttgttaacgagtgccctaagggcactctttaaggattactaataaagaaattattttttaaaaa 28695802  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 266
Target Start/End: Original strand, 36702758 - 36702786
Alignment:
Q  238 ttattattagggtcttgttaacgagtgct 266  Q
    |||||||||||||||||||||||||||||    
T  36702758 ttattattagggtcttgttaacgagtgct 36702786  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 39804993 - 39804957
Alignment:
Q  278 tttaaggttttccaattaagaaattattctttgaaaa 314  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  39804993 tttaaggttttccaattaaaaaattattatttgaaaa 39804957  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 248601 - 248541
Alignment:
Q  246 agggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattatt 305  Q
    |||||||||||||||||||  ||||||||||| ||||||||||  ||||||||||||||||    
T  248601 agggtcttgttaacgagtgtcttaagggcactctttaaggtttctcaattaagaaattatt 248541  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 314
Target Start/End: Complemental strand, 20125790 - 20125724
Alignment:
Q  247 gggtcttgttaacgagtgctttaagggcacttttaaggttttccaattaagaaattattctttgaaaa 314  Q
    ||||||||||||||||||  |||| ||||||||||| ||||| |||||||| ||||||||||| ||||    
T  20125790 gggtcttgttaacgagtgtcttaaaggcacttttaaagtttttcaattaag-aattattctttaaaaa 20125724  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 591363 - 591294
Alignment:
Q  246 agggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaa 314  Q
    ||||||||||||||||||||  ||| | |||| ||||||| |||| ||| ||||||||||||||| ||||    
T  591363 agggtcttgttaacgagtgccctaaagacactctttaaggatttctaataaagaaattattctttaaaaa 591294  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 31294370 - 31294406
Alignment:
Q  278 tttaaggttttccaattaagaaattattctttgaaaa 314  Q
    |||||||||||| ||||||||||||||||||||||||    
T  31294370 tttaaggttttctaattaagaaattattctttgaaaa 31294406  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 3973783 - 3973841
Alignment:
Q  249 gtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattc 306  Q
    ||||||||||| |||||  |||| ||||| |||||||||| ||||||||||||||||||    
T  3973783 gtcttgttaacaagtgccctaagagcactctttaaggtttcccaattaagaaattattc 3973841  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 4009622 - 4009564
Alignment:
Q  249 gtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattc 306  Q
    ||||||||||| |||||  |||| ||||| |||||||||| ||||||||||||||||||    
T  4009622 gtcttgttaacaagtgccctaagagcactctttaaggtttcccaattaagaaattattc 4009564  T

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Target: scaffold0633 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 5143 - 5082
Alignment:
Q  246 agggtcttgttaacgagtgctttaagggcactttt-aaggttttccaattaagaaattattc 306  Q
    |||||||||||||| ||||| |||||  ||||||| ||||||| |||||||| |||||||||    
T  5143 agggtcttgttaacaagtgccttaagaacactttttaaggtttcccaattaaaaaattattc 5082  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 20142578 - 20142509
Alignment:
Q  246 agggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaa 314  Q
    |||||||||||||||||||   ||||| |||| |||||||| || |||||||||||||||| ||| ||||    
T  20142578 agggtcttgttaacgagtgtcctaaggacactctttaaggtatttcaattaagaaattatttttttaaaa 20142509  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 5248772 - 5248703
Alignment:
Q  246 agggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaa 314  Q
    |||||||||||||||||  | ||||||||||| ||||||| || | ||| ||||||||||||||| ||||    
T  5248772 agggtcttgttaacgagccccttaagggcactctttaaggattcctaataaagaaattattctttaaaaa 5248703  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 314
Target Start/End: Original strand, 6775198 - 6775267
Alignment:
Q  246 agggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaa 314  Q
    ||||||||||||| |||||   | |||||||| ||||||||||  ||||||| |||||||||||||||||    
T  6775198 agggtcttgttaaggagtgtccttagggcactctttaaggtttctcaattaataaattattctttgaaaa 6775267  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 44319994 - 44319925
Alignment:
Q  246 agggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaa 314  Q
    |||||||||||||||||||   ||||| |||| |||||||| || |||||||||||||||| ||| ||||    
T  44319994 agggtcttgttaacgagtgtcctaaggacactctttaaggtatttcaattaagaaattatttttttaaaa 44319925  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 6771837 - 6771873
Alignment:
Q  278 tttaaggttttccaattaagaaattattctttgaaaa 314  Q
    ||||||||||  |||||||||||||||||||||||||    
T  6771837 tttaaggtttctcaattaagaaattattctttgaaaa 6771873  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 306
Target Start/End: Original strand, 21301 - 21329
Alignment:
Q  278 tttaaggttttccaattaagaaattattc 306  Q
    |||||||||||||||||||||||||||||    
T  21301 tttaaggttttccaattaagaaattattc 21329  T

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