View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_37 (Length: 310)
Name: NF7332_low_37
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 3625332 - 3625049
Alignment:
| Q |
19 |
gttcatacatggtttaaaacatgtccctcaaataataaatcggtgtctcacatttgctaaatcaaaatattgtttgttgattgcacatcggcaaaaatgc |
118 |
Q |
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| T |
3625332 |
gttcatacatggtttaaaacatgtcccttaaataataaatcgatgtctcgcatttgctaaatcaaaatatcgtttgttgattgcacgtcgacaaaagtgc |
3625233 |
T |
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| Q |
119 |
agattcgttgattgaaatcctgtttacttagcaaatcgagattttgtcactcagagagaatagtcagctggtcttcgacgcaatcactaaatcaatttaa |
218 |
Q |
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| T |
3625232 |
aaattcgttgattgaaatcttgtttacttagcaaatcgagattttgtcactcagaaggaacagtcagctggtcttcgactcaatcactaaatcaacttaa |
3625133 |
T |
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| Q |
219 |
ttcattgggtgaagtgtttcttatccaacaaagttgctatagc-ttttctccctataactctcttagattgctcgccttcatctc |
302 |
Q |
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| T |
3625132 |
ttcgtt-ggtgaagtgtttcttgtccaacgaagttgctatagctttttctccctttaactctcttagatttctcgccttcatctc |
3625049 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 34049247 - 34049196
Alignment:
| Q |
63 |
gtctcacatttgctaaatcaaaatattgtttgttgattgcacatcggcaaaa |
114 |
Q |
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| T |
34049247 |
gtctcacacttgctaaatcaaaatattgtttgcagattgcacgtcgacaaaa |
34049196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 8934081 - 8934033
Alignment:
| Q |
66 |
tcacatttgctaaatcaaaatattgtttgttgattgcacatcggcaaaa |
114 |
Q |
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| T |
8934081 |
tcacacttgctaaatcaaaatatcgtttttggattgcacatcgacaaaa |
8934033 |
T |
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