View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_42 (Length: 279)
Name: NF7332_low_42
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 42480239 - 42479965
Alignment:
| Q |
1 |
caggtgaaactcaaataacaccaactcacatatcagatgaagaagcaaacctcttcgccatgcaactagcaagtgcctcagttcttcccatggttttaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42480239 |
caggtgaaactcaaataacaccaactcacatatcagatgaagaagcaaacctcttcgccatgcaactagcaagtgcctcagttcttcccatggttttaaa |
42480140 |
T |
|
| Q |
101 |
atcagctcttgaacttgatctcttagaaatcattgctaaagctggacctggtgctcaaatttcacctattgaaattgcttctcagctcccaacaactaac |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42480139 |
atcagctcttgaacttgatctcttagaaatcattgctaaagctggacctggtgctcaaatttcacctattgaaattgcttctcagctcccaacaactaac |
42480040 |
T |
|
| Q |
201 |
cctgaagcaccggttatgctggaccgtatcttgcgtctattggcttgttacaatatcctcacaggttctgctcgt |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
42480039 |
cctgaagcaccggttatgctggaccgtatcttgcgtctattggcttgttacaatatcctcacttgttctgttcgt |
42479965 |
T |
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