View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_46 (Length: 268)
Name: NF7332_low_46
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 2409021 - 2408786
Alignment:
| Q |
16 |
atatgaacctagaaatcactttgatggacaatgacaagttggaaaatattcatcaagggaatcaaaatacctcaaacgcaaatatttcacttgttttcca |
115 |
Q |
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| T |
2409021 |
atatgaacctagaaatcactttgatggacaatgacaagttggaaaatattcat-aagggaatcaaaatacctcaaacacaaatatttcacttgttttcca |
2408923 |
T |
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| Q |
116 |
tgcacaatttcgattgttgatgagcttcaaagcacggtaatgatttagcaccaaagaacagtatacatcacttcttcttccttgccgtcacaagcttgca |
215 |
Q |
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| T |
2408922 |
tgcacaatttcgattgttgatgagcttcaaagcacggaaatgatttagcaccaaagaacattatacatcacttcttcttccttgccgtcacaagcttgca |
2408823 |
T |
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| Q |
216 |
actctttattcccctttggatttctatttctcaaaac |
252 |
Q |
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| T |
2408822 |
actctttattcccctttggatttctatttctcaaaac |
2408786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 2412478 - 2412266
Alignment:
| Q |
19 |
tgaacctagaaatcactttgatggacaatgacaagttggaaaatattcatcaagggaatcaaaatacctcaaacgcaaatatttcacttgttttccatgc |
118 |
Q |
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|||||| | ||||||||||||| | || |||||||||| ||| ||||||| ||||||||||||||||||||||| |||| ||| ||||||| ||| ||| |
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| T |
2412478 |
tgaaccaataaatcactttgattggcactgacaagttgcaaactattcat-aagggaatcaaaatacctcaaacacaaagattccacttgtcttcg-tgc |
2412381 |
T |
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| Q |
119 |
acaatttcgattgttgatgagcttcaaagcacggtaatgatttagcaccaaagaacagtatacatcacttcttcttccttgccgtcacaagcttgcaact |
218 |
Q |
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|| |||| ||| ||||||||||| |||| | | |||||||||||||| ||||| || |||||| ||||||||||| || ||||||||| |||||| |
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| T |
2412380 |
acgattttgatctttgatgagctttgaagcgctaaattgatttagcaccaacgaacaataaacatcatttcttcttcctcaccatcacaagctcgcaact |
2412281 |
T |
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| Q |
219 |
ctttattcccctttg |
233 |
Q |
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| T |
2412280 |
ctttattcccctttg |
2412266 |
T |
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