View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_54 (Length: 254)
Name: NF7332_low_54
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 19505469 - 19505231
Alignment:
| Q |
1 |
aatatttaattttactaaattaaattaaaatatttatttccatatagttataggtcaattattgaacattatagaagtagatgctaattacctttccatc |
100 |
Q |
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| T |
19505469 |
aatatttagttttactaaattaaattaaaatatttatttccatatagttataggtcaattattgaacattatagaagtatatgctaattacctttccatc |
19505370 |
T |
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| Q |
101 |
cctaagtccttcatggcaattctagtatctttttcagtagctccctcttgttgaagcatgttcaatttctcctcaactactctcttttcctcatcaatgt |
200 |
Q |
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| T |
19505369 |
cctaagtccttcatggcaattctagtatctttttcagtagctccctcttgttgaagcatgttcaatttctcctcaactactctcttttcctcatcaatgt |
19505270 |
T |
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| Q |
201 |
ctagtccttgcactccatttagtgaaacaccaagttggt |
239 |
Q |
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| T |
19505269 |
ctagtccttgcactccatttagtgaaacaccaagttggt |
19505231 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 36183849 - 36183919
Alignment:
| Q |
161 |
ttcaatttctcctcaactactctcttttcctcatcaatgtctagtccttgcactccatttagtgaaacacc |
231 |
Q |
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| T |
36183849 |
ttcaatttctcctccactaatttcttttccatgtcaatgtcaagtcctggaactccatttagtgacacacc |
36183919 |
T |
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