View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_56 (Length: 250)
Name: NF7332_low_56
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 9081996 - 9082209
Alignment:
| Q |
21 |
gttttcaaacttcctaaaagttgaagtatattaatgtatcggtttttgttttattttagaattaatttgtatcactatttcaatagaaagtggcaagg-- |
118 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9081996 |
gttttcaaacttcctaga-gttgaagtatattaatgtatcggtttttgttttattttagaattaatttgtatcactatttcaatagaaagtggcaaggtt |
9082094 |
T |
|
| Q |
119 |
nnnnnnnnngttttgacagaaagagtgggaaggttttaatacaatagagatagagaatgaaagttggagcnnnnnnnnagatatgccaagatcgttttta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9082095 |
tttttttttgttttgacagaaagagtgggaaggttttaatacaatagagatagagaatgaaagttggagcttttttttagatatgccaagatcgttttta |
9082194 |
T |
|
| Q |
219 |
tgagacaattgatcg |
233 |
Q |
| |
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||||||||||||||| |
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|
| T |
9082195 |
tgagacaattgatcg |
9082209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 32665178 - 32664964
Alignment:
| Q |
21 |
gttttcaaacttcctaaaagttgaagtatattaatgtatcggtttttgtttt-attttagaattaatttgtatcactatttcaatagaaagtggcaagg- |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32665178 |
gttttcaaacttcctaaa-gttgaagtatattaatgtatcggtttttgtttttattttagaattaatttgtatcactatttcaatagaaagtggcaaggt |
32665080 |
T |
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| Q |
119 |
-nnnnnnnnngttttgacagaaagagtgggaaggttttaatacaatagagatagagaatgaaagttggagcnnnnnnnnagatatgccaagatcgttttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32665079 |
ttttttttttgttttgacagaaagagtgggaaggttttaatacaatagagatagagaatgaaagttggaggttttttttagatatgccaagatcgttttt |
32664980 |
T |
|
| Q |
218 |
atgagacaattgatcg |
233 |
Q |
| |
|
|||||||||||||||| |
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| T |
32664979 |
atgagacaattgatcg |
32664964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 6413195 - 6413408
Alignment:
| Q |
21 |
gttttcaaacttcctaaaagttgaagtatattaatgtatcggtttttgtttt-attttagaattaatttgtatcactatttcaatagaaagtggcaagg- |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6413195 |
gttttcaaacttcctaaa-gttgaagtatattaatgtatcggtttttgtttttattttagaattaatttgtatcactatttcaatagaaagtggcaaggt |
6413293 |
T |
|
| Q |
119 |
nnnnnnnnngttttgacagaaagagtgggaaggttttaatacaatagagatagagaatgaaagttggagcnnnnnnnnagatatgccaagatcgttttta |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
6413294 |
ttttttttagttttgacagaaagagtgggaaggttttaatacaatagagattgagaatgaaagttggagcttttttttagatatgccaagatcgttttta |
6413393 |
T |
|
| Q |
219 |
tgagacaattgatcg |
233 |
Q |
| |
|
||||||||||||||| |
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| T |
6413394 |
tgagacaattgatcg |
6413408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 26292097 - 26292172
Alignment:
| Q |
156 |
aatacaatagagatagagaatgaaagttggagcnnnnnnnnagatatgccaagatcgtttttatgagacaattgatc |
232 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
26292097 |
aatacaatagagatagagaatgaaagttggagc-tttttttagatatgccaagattgtttttatgagacaattgatc |
26292172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 53692514 - 53692550
Alignment:
| Q |
37 |
aaagttgaagtatattaatgtatcggtttttgtttta |
73 |
Q |
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||||||||| |||||||||| |||||||||||||||| |
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| T |
53692514 |
aaagttgaaatatattaatgcatcggtttttgtttta |
53692550 |
T |
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