View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7332_low_57 (Length: 250)
Name: NF7332_low_57
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_57 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 45476685 - 45476918
Alignment:
| Q |
1 |
atatagtttatattcgatgttatgttagtgtaagtaaaagaaatattaatattattatctgataagcgcatatgaaaatgcaaacaactgaaaacgtcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45476685 |
atatagtttatattcgatgttatgttagtgtaagtaaaagaaatattaatattattatctgataagcgcatatgaaaatgcaaacaactgaaaacgtcaa |
45476784 |
T |
|
| Q |
101 |
acccctcaataatttgaatattaaaaataaaatccttttgtcaaaacataaactaaaatgatccttttcctcagaaaattaagctgaaatgaaatgatcc |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
45476785 |
acccctcaataatttaaatattaaaaataaaatccttttgtcaaaacataaactaaaatgatccttttcctcagaaaatta-----aactgaaatgatcc |
45476879 |
T |
|
| Q |
201 |
tcttctgtctgattgattgttttcatacttccccttctt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45476880 |
tcttctgtctgattgattgttttcatacttccctttctt |
45476918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University