View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_6 (Length: 639)
Name: NF7332_low_6
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 11 - 623
Target Start/End: Complemental strand, 1731916 - 1731300
Alignment:
| Q |
11 |
cgaagaatatggtataaaaataaataaaaactatgcacacaaagcagatacctgaaaagtggtcgtttagctcttccacaatttctgaaccctcaaactg |
110 |
Q |
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| T |
1731916 |
cgaataatatggtatcaaaataaataaaaactatgcacacaaagcagatacctgaaaagtggtcgtttagctcttccacaatttctgaaccctcaaactg |
1731817 |
T |
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| Q |
111 |
caaaaaat--tatagtgaagtattcgaaaatgaaatgggataagtggctaagaatgttgcaaagatgcatgttcaataaaactgaagtttatatcatgtt |
208 |
Q |
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| T |
1731816 |
caaaaaaaaatatagtgaagtattcgaaaatgaaatgggataagtggctaagaatgttgcaaagatgcatgttcaataaaactgaagtttatatcacgtt |
1731717 |
T |
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| Q |
209 |
tatcgaatcttagggccttagttaaacaaatatccatgttttaggaaaattgatatattgatgcattgaagaaatttaagtcttcattttaagaaaagga |
308 |
Q |
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| T |
1731716 |
tatcgaatcttagggccttagttaaacaaatatgcatgttttaggaaaattgatatattgatgcattgaagaaatttaagtcttcattttaagaaaagga |
1731617 |
T |
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| Q |
309 |
aatcaacaattcttcaaatcaaaatggtaatatatgtttatttgatttaagatttaagctcat--tatgtgttacagcatgaaaaatacatgctttgtaa |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
1731616 |
aatcaacaattcttcaaatcaaaatggtaatatatgtttatttgatttaagatttaagctcattatatgtgttacagcatgaaaaagacatgctttgtaa |
1731517 |
T |
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| Q |
407 |
tcaggtgacttcatgggagaagagtatatattgaatgtgattccattttcaagaatgatgattaagatttaatacacagggatgagttgcatgcatgtca |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1731516 |
tcaggtgacttcatgggagaagagtatatattgaatgtgattccattttcaagaatgatgattaagatttaatacacagggatgagttgcatgcatgtca |
1731417 |
T |
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| Q |
507 |
atgcatctcatcgtgtgtgcgcgtatgtgtgtttcattccatctgttgctctaccgaaaggnnnnnnnttaaagctgtaaaatcctgtaaagggaacacc |
606 |
Q |
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| T |
1731416 |
atgcatctcatcgtgtgtgcgcatatgtgtgtttcattccatctgttgctctaccgaaaggaaaaaaattaaagctgtaaaatcctgtaaagggaacacc |
1731317 |
T |
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| Q |
607 |
ttacaagaaatcatttc |
623 |
Q |
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| T |
1731316 |
ttacaagaaatcatttc |
1731300 |
T |
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