View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7332_low_62 (Length: 244)

Name: NF7332_low_62
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7332_low_62
NF7332_low_62
[»] chr5 (2 HSPs)
chr5 (13-228)||(12814623-12814838)
chr5 (13-228)||(12751661-12751876)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 12814623 - 12814838
Alignment:
Q  13 aatatcgtaatgacaggccaattagttacattaactaaactcaagcaccaaaatccactgaagggaatctactcatcggtgcaaacagtttgacatcgta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12814623 aatatcgtaatgacaggccaattagttacattaactaaactcaagcaccaaaatccaccgaagggaatctactcatcggtgcaaacagtttgacatcgta 12814722  T
Q  113 atctactcatgtattaaacaaacaacaaatattgggaagatggggatatgccttaaatcactagtaatatttatcatcaccaatgctatcatttaaaata 212  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12814723 atctcctcatgtattaaacaaacaacaaatattgggaagatggggatatgccttaaatcactagtaatatttatcatcaccaatgctatcatttaaaata 12814822  T
Q  213 ttattgtcctaaaaaa 228  Q
    ||||||||| ||||||    
T  12814823 ttattgtccaaaaaaa 12814838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 12751661 - 12751876
Alignment:
Q  13 aatatcgtaatgacaggccaattagttacattaactaaactcaagcaccaaaatccactgaagggaatctactcatcggtgcaaacagtttgacatcgta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||    
T  12751661 aatatcgtaatgacaggccaattagttacattaactaaactcaagcaccaaaatcaaccgaaggggatctactcatcggtgcaaacagtttgacatcgta 12751760  T
Q  113 atctactcatgtattaaacaaacaacaaatattgggaagatggggatatgccttaaatcactagtaatatttatcatcaccaatgctatcatttaaaata 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12751761 atctactcatgtattaaacaaacaacaaatattgggaagatggggatatgccttaaatcactagtaatatttatcatcaccaatgctatcatttaaaata 12751860  T
Q  213 ttattgtcctaaaaaa 228  Q
    ||||||||| ||||||    
T  12751861 ttattgtccaaaaaaa 12751876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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